Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   M9H69_RS04795 Genome accession   NZ_CP097843
Coordinates   917782..918630 (+) Length   282 a.a.
NCBI ID   WP_250316067.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 912782..923630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS04780 (M9H69_04780) - 914309..915037 (+) 729 WP_250316065.1 metallophosphoesterase family protein -
  M9H69_RS04785 (M9H69_04785) lepA 915116..916939 (+) 1824 WP_250316066.1 translation elongation factor 4 -
  M9H69_RS04790 (M9H69_04790) - 917078..917701 (+) 624 WP_000734764.1 hypothetical protein -
  M9H69_RS04795 (M9H69_04795) dprA/cilB/dalA 917782..918630 (+) 849 WP_250316067.1 DNA-processing protein DprA Machinery gene
  M9H69_RS04800 (M9H69_04800) topA 918748..920835 (+) 2088 WP_250316068.1 type I DNA topoisomerase -
  M9H69_RS04805 (M9H69_04805) - 920943..921302 (+) 360 WP_250316069.1 YbaN family protein -
  M9H69_RS04810 (M9H69_04810) - 921395..922027 (+) 633 WP_250316070.1 copper homeostasis protein CutC -
  M9H69_RS04815 (M9H69_04815) - 922071..922727 (+) 657 WP_250316071.1 MmcQ/YjbR family DNA-binding protein -

Sequence


Protein


Download         Length: 282 a.a.        Molecular weight: 31233.77 Da        Isoelectric Point: 5.0403

>NTDB_id=692924 M9H69_RS04795 WP_250316067.1 917782..918630(+) (dprA/cilB/dalA) [Streptococcus oralis strain HP01]
MKITNYEIYKLRKAGLTNQQILTVLEYDETVDQELLLGDIAELSGCRNPAVFMERYFQIDDAQLEKEFQKFPSFSILDDC
YPWNLSEIYDAPVLLFYKGNLDLLKFPKVAVVGSRSCSSQGAKSVQRVIQGLGNELIVVSGLAKGIDTAAHMAALQNGGR
TIAVIGTGLDVFYPKANKRLQEYIGNDHLVLSEYGPGEQPLKFHFPARNRIIAGLCRGVIVAEARMRSGSLITCERAMEE
GRDVFAIPGNILDGYSDGCHHLIQEGAKLVTSGQDVMAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=692924 M9H69_RS04795 WP_250316067.1 917782..918630(+) (dprA/cilB/dalA) [Streptococcus oralis strain HP01]
ATGAAGATCACAAACTATGAGATTTACAAATTGAGAAAAGCTGGGCTGACAAATCAACAAATTTTAACTGTTCTTGAATA
CGATGAGACTGTAGATCAGGAGCTCTTGCTAGGTGATATTGCAGAACTATCGGGGTGTCGTAATCCTGCGGTCTTTATGG
AACGCTATTTCCAGATAGATGATGCACAGTTGGAGAAGGAGTTCCAAAAATTTCCATCCTTCTCGATTCTTGATGACTGT
TATCCTTGGAATCTGAGTGAGATTTATGATGCTCCAGTGCTCTTGTTTTATAAAGGAAATCTGGACTTGTTGAAATTTCC
AAAGGTTGCTGTTGTAGGGAGCCGTTCATGTTCTAGTCAGGGAGCAAAGTCGGTTCAGAGAGTCATCCAAGGTTTGGGAA
ACGAGTTGATCGTGGTCAGTGGTTTAGCCAAAGGGATTGATACGGCTGCCCACATGGCTGCACTTCAGAATGGAGGAAGA
ACGATTGCTGTGATTGGAACAGGATTGGATGTGTTTTATCCTAAAGCCAATAAACGCTTGCAGGAGTACATTGGCAATGA
CCATCTGGTTCTCAGTGAATATGGACCTGGCGAGCAACCTCTGAAATTTCATTTTCCAGCTCGTAATCGCATCATTGCTG
GCCTTTGCCGTGGTGTGATCGTTGCAGAGGCAAGGATGCGTTCTGGTAGTCTTATTACCTGTGAGCGAGCTATGGAAGAA
GGACGCGATGTTTTTGCCATTCCAGGAAACATTTTAGATGGCTATTCAGATGGCTGTCACCACCTGATCCAAGAGGGAGC
AAAACTGGTCACAAGTGGTCAAGATGTGATGGCAGAGTTTGAATTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

92.199

100

0.922

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

91.844

100

0.918

  dprA/cilB/dalA Streptococcus pneumoniae D39

91.844

100

0.918

  dprA/cilB/dalA Streptococcus pneumoniae R6

91.844

100

0.918

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

91.844

100

0.918

  dprA/cilB/dalA Streptococcus mitis SK321

91.135

100

0.911

  dprA Streptococcus mutans UA159

61.429

99.291

0.61

  dprA Lactococcus lactis subsp. cremoris KW2

55

99.291

0.546

  dprA Acinetobacter baylyi ADP1

39.544

93.262

0.369