NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	M8847_RS05740	Genome accession	NZ_CP097607
Coordinates	1264691..1265125 (-)	Length	144 a.a.
NCBI ID	WP_005741096.1	Uniprot ID	-
Organism	Pasteurella multocida strain 11020
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1259691..1270125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M8847_RS05710 (M8847_05710)	-	1260255..1260524 (-)	270	WP_005722568.1	GNAT family N-acetyltransferase	-
M8847_RS05715 (M8847_05715)	yacG	1260524..1260727 (-)	204	WP_005719879.1	DNA gyrase inhibitor YacG	-
M8847_RS05720 (M8847_05720)	coaE	1260738..1261358 (-)	621	WP_005722564.1	dephospho-CoA kinase	-
M8847_RS05725 (M8847_05725)	-	1261373..1262095 (-)	723	WP_170385408.1	A24 family peptidase	-
M8847_RS05730 (M8847_05730)	-	1262095..1263306 (-)	1212	WP_250192716.1	type II secretion system F family protein	-
M8847_RS05735 (M8847_05735)	pilB	1263306..1264691 (-)	1386	WP_169323466.1	GspE/PulE family protein	Machinery gene
M8847_RS05740 (M8847_05740)	pilA	1264691..1265125 (-)	435	WP_005741096.1	prepilin peptidase-dependent pilin	Machinery gene
M8847_RS05745 (M8847_05745)	ampD	1265285..1265851 (+)	567	WP_005719130.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
M8847_RS05750 (M8847_05750)	rppH	1266437..1267033 (+)	597	WP_005722417.1	RNA pyrophosphohydrolase	-
M8847_RS05755 (M8847_05755)	-	1267036..1267830 (+)	795	WP_061406216.1	sulfite exporter TauE/SafE family protein	-
M8847_RS05760 (M8847_05760)	lgt	1267840..1268652 (+)	813	WP_156732338.1	prolipoprotein diacylglyceryl transferase	-
M8847_RS05765 (M8847_05765)	-	1268649..1269500 (+)	852	WP_005751072.1	thymidylate synthase	-
M8847_RS05770 (M8847_05770)	tadA	1269515..1270015 (+)	501	WP_005722410.1	tRNA adenosine(34) deaminase TadA	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15058.48 Da Isoelectric Point: 9.1281

                                >NTDB_id=691126 M8847_RS05740 WP_005741096.1 1264691..1265125(-) (pilA) [Pasteurella multocida strain 11020]

MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR

ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide

Download Length: 435 bp

                                >NTDB_id=691126 M8847_RS05740 WP_005741096.1 1264691..1265125(-) (pilA) [Pasteurella multocida strain 11020]

ATGAAAAAAGCTATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT

TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCAGCTC

CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT

GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG

CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTGAATTGTGGTGCTC

AATCTGACATTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Haemophilus influenzae 86-028NP	63.194	100	0.632
pilA	Haemophilus influenzae Rd KW20	61.111	100	0.611
pilA	Glaesserella parasuis strain SC1401	52.349	100	0.542
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.806	100	0.368
pilA	Vibrio cholerae strain A1552	36.806	100	0.368
pilA	Vibrio cholerae C6706	36.806	100	0.368

Detailed information NTG0691126