Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OTB22_RS06290 Genome accession   NZ_CP113267
Coordinates   1238584..1239306 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233584..1244306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS06280 (OTB22_06285) - 1236159..1237325 (-) 1167 WP_000521381.1 MalY/PatB family protein -
  OTB22_RS06285 (OTB22_06290) - 1237333..1238427 (-) 1095 WP_000031974.1 cystathionine gamma-synthase -
  OTB22_RS06290 (OTB22_06295) rcrP 1238584..1239306 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  OTB22_RS06295 (OTB22_06300) - 1239331..1240259 (-) 929 Protein_1252 ABC transporter ATP-binding protein -
  OTB22_RS06300 (OTB22_06305) amiA 1240431..1242389 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  OTB22_RS06305 (OTB22_06310) - 1242593..1244215 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=690644 OTB22_RS06290 WP_001010371.1 1238584..1239306(-) (rcrP) [Streptococcus pneumoniae strain BC2]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=690644 OTB22_RS06290 WP_001010371.1 1238584..1239306(-) (rcrP) [Streptococcus pneumoniae strain BC2]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCTACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363