Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STO1_RS00180 Genome accession   NZ_AP018338
Coordinates   34190..34855 (+) Length   221 a.a.
NCBI ID   WP_096421423.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29190..39855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS00150 (STO1_000280) tsf 29401..30441 (+) 1041 WP_000808088.1 translation elongation factor Ts -
  STO1_RS00160 (STO1_000290) cysK 30721..31647 (-) 927 WP_096421417.1 cysteine synthase A -
  STO1_RS00165 (STO1_000300) - 31744..32187 (-) 444 WP_033584681.1 PH domain-containing protein -
  STO1_RS00170 (STO1_000310) - 32203..32838 (-) 636 WP_096421419.1 YigZ family protein -
  STO1_RS00175 (STO1_000320) comFA/cflA 32895..34193 (+) 1299 WP_096421421.1 DEAD/DEAH box helicase Machinery gene
  STO1_RS00180 (STO1_000330) comFC/cflB 34190..34855 (+) 666 WP_096421423.1 ComF family protein Machinery gene
  STO1_RS00185 (STO1_000340) hpf 34935..35483 (+) 549 WP_096421425.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  STO1_RS00190 (STO1_000350) - 35731..36939 (+) 1209 WP_000201480.1 acyl-CoA dehydrogenase family protein -
  STO1_RS00195 (STO1_000360) - 37020..37868 (+) 849 WP_025171502.1 3-hydroxybutyryl-CoA dehydrogenase -
  STO1_RS00200 (STO1_000370) - 37887..39065 (+) 1179 WP_007520939.1 acetyl-CoA C-acetyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25067.15 Da        Isoelectric Point: 8.0972

>NTDB_id=69028 STO1_RS00180 WP_096421423.1 34190..34855(+) (comFC/cflB) [Streptococcus oralis subsp. tigurinus strain osk_001]
MNCLLCGQTTKCELTFSSLFLLKDDCSYLCLACASSFEKIGEKYCPNCMKTGVSTQCQDCKLWCKEGVQVDHKAIFTYNQ
AMKDFFSQYKFDGDFLLRKVFASVLAEELKQYRGYQFVIIPLSPERLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLTTEIPFFIKNGISLPKKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=69028 STO1_RS00180 WP_096421423.1 34190..34855(+) (comFC/cflB) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAACTGTTTATTATGTGGACAGACTACCAAGTGTGAGCTGACTTTTAGTAGTCTCTTCCTTTTGAAGGATGACTGCAG
TTATCTTTGCTTAGCTTGTGCTTCTAGTTTTGAGAAGATTGGTGAGAAATATTGTCCAAACTGTATGAAAACAGGGGTGT
CAACTCAGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAGTGCAGGTTGATCATAAGGCGATTTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCAATATAAGTTTGATGGCGATTTTTTGCTTAGAAAAGTTTTTGCTTCTGTTCTTGCTGA
GGAGCTGAAACAGTATAGAGGTTATCAATTTGTTATAATTCCCCTAAGTCCTGAAAGATTGCTTGAGAGGGGATTTAATC
AGGTTGAAGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGTGCTAGTTCCTCT
AAAAGCCGTTTGGAAAGGTTGACTACTGAAATTCCATTTTTTATTAAAAATGGAATCTCACTTCCTAAGAAGAAGATTTT
GCTGATTGATGACATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTCTGGAAGAAGCGGGTGCTTTGGAAG
TTAAAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

78.281

100

0.783
  comFC/cflB Streptococcus mitis NCTC 12261

78.281

100

0.783
  comFC/cflB Streptococcus pneumoniae TIGR4

76.018

100

0.76
  comFC/cflB Streptococcus pneumoniae Rx1

76.018

100

0.76
  comFC/cflB Streptococcus pneumoniae D39

76.018

100

0.76
  comFC/cflB Streptococcus pneumoniae R6

76.018

100

0.76
  comFC Bacillus subtilis subsp. subtilis str. 168

37.281

100

0.385

Multiple sequence alignment