Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OHM49_RS09355 Genome accession   NZ_CP109940
Coordinates   1885676..1886164 (-) Length   162 a.a.
NCBI ID   WP_249547176.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34572     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1880676..1891164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM49_RS09335 (OHM49_09335) - 1882193..1882828 (-) 636 WP_024394859.1 hypothetical protein -
  OHM49_RS09340 (OHM49_09340) comE/comE2 1883406..1884155 (-) 750 WP_024394858.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  OHM49_RS09345 (OHM49_09345) - 1884170..1885039 (-) 870 WP_226313481.1 GHKL domain-containing protein -
  OHM49_RS09350 (OHM49_09350) - 1885499..1885654 (-) 156 WP_000794567.1 hypothetical protein -
  OHM49_RS09355 (OHM49_09355) comA 1885676..1886164 (-) 489 WP_249547176.1 ATP-binding cassette domain-containing protein Regulator
  OHM49_RS09360 (OHM49_09360) - 1886259..1887263 (+) 1005 WP_002935211.1 IS5 family transposase -
  OHM49_RS09365 (OHM49_09365) comA 1887367..1889022 (-) 1656 WP_249547177.1 peptide cleavage/export ABC transporter Regulator
  OHM49_RS09370 (OHM49_09370) - 1889225..1889416 (-) 192 WP_002935101.1 hypothetical protein -
  OHM49_RS09375 (OHM49_09375) - 1889505..1889777 (-) 273 WP_002935103.1 DUF3884 family protein -
  OHM49_RS09380 (OHM49_09380) - 1889806..1890045 (-) 240 WP_044674089.1 hypothetical protein -
  OHM49_RS09385 (OHM49_09385) - 1890080..1891123 (-) 1044 WP_228477119.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18291.02 Da        Isoelectric Point: 4.3565

>NTDB_id=682492 OHM49_RS09355 WP_249547176.1 1885676..1886164(-) (comA) [Streptococcus suis strain ID34572]
MRQLINYIPQKPYIFNGTILDNLLLGVEDEISFEEINKATEIAEIKSVIENLPLGYETELSPEHSILSGGQLQRVAIARA
LLTNPSVLILDESTSNLDNLTERKIIDNLMSLDTTVIFIAHRLNITEQVERIFVIENGMIIENGNHEDLILKQGFYSKIL
KG

Nucleotide


Download         Length: 489 bp        

>NTDB_id=682492 OHM49_RS09355 WP_249547176.1 1885676..1886164(-) (comA) [Streptococcus suis strain ID34572]
TTGAGACAATTGATTAATTATATACCCCAGAAACCTTATATTTTTAACGGTACTATATTAGATAATCTTTTATTAGGTGT
TGAAGATGAAATTTCATTTGAAGAGATTAATAAAGCTACTGAGATTGCCGAGATAAAATCTGTTATAGAGAATTTACCGT
TAGGATATGAGACCGAACTTTCCCCTGAACATAGCATTTTGTCAGGAGGTCAACTTCAGAGAGTTGCTATTGCACGTGCA
TTATTAACCAATCCCTCGGTATTAATCTTAGATGAGTCAACAAGTAATTTGGATAATTTAACGGAAAGAAAAATTATTGA
TAATTTAATGAGCTTAGATACAACTGTAATATTTATTGCTCACCGTCTTAATATAACAGAACAGGTTGAAAGGATATTTG
TCATAGAAAATGGTATGATAATCGAAAACGGAAATCATGAAGATTTGATATTAAAACAAGGGTTTTATTCTAAAATATTA
AAAGGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

58.125

98.765

0.574
  comA Streptococcus mitis NCTC 12261

57.5

98.765

0.568
  comA Streptococcus pneumoniae Rx1

55.625

98.765

0.549
  comA Streptococcus pneumoniae R6

55.625

98.765

0.549
  comA Streptococcus pneumoniae D39

55.625

98.765

0.549
  comA Streptococcus mitis SK321

55.625

98.765

0.549
  comA Streptococcus pneumoniae TIGR4

55

98.765

0.543
  comA/nlmT Streptococcus mutans UA159

54.14

96.914

0.525