Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG875_RS13675 Genome accession   NZ_CP109598
Coordinates   3242064..3242723 (-) Length   219 a.a.
NCBI ID   WP_330174494.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01498     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3237064..3247723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG875_RS13660 (OG875_13655) - 3237248..3238312 (+) 1065 WP_330174491.1 ABC transporter ATP-binding protein -
  OG875_RS13665 (OG875_13660) - 3238309..3239967 (+) 1659 WP_330174492.1 ABC transporter permease -
  OG875_RS13670 (OG875_13665) - 3240079..3241470 (-) 1392 WP_330174493.1 cytochrome P450 -
  OG875_RS13675 (OG875_13670) vraR 3242064..3242723 (-) 660 WP_330174494.1 response regulator transcription factor Regulator
  OG875_RS13680 (OG875_13675) - 3242720..3244069 (-) 1350 WP_330174495.1 histidine kinase -
  OG875_RS13685 (OG875_13680) - 3244475..3245332 (-) 858 WP_330174496.1 NmrA family NAD(P)-binding protein -
  OG875_RS13690 (OG875_13685) - 3245447..3246328 (-) 882 WP_330174497.1 alpha/beta hydrolase -
  OG875_RS13695 (OG875_13690) - 3246564..3246878 (-) 315 WP_330174498.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23500.20 Da        Isoelectric Point: 4.5425

>NTDB_id=679429 OG875_RS13675 WP_330174494.1 3242064..3242723(-) (vraR) [Streptomyces sp. NBC_01498]
MTIRVLIVDDQVMVREGFSVLLNAMPDIEVVGEAVNGREAVTQVAALAPDVVLMDIRMPELNGIDATREIVAADADAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALAQMGELTERE
TEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=679429 OG875_RS13675 WP_330174494.1 3242064..3242723(-) (vraR) [Streptomyces sp. NBC_01498]
ATGACGATCCGCGTCCTGATCGTCGACGACCAGGTGATGGTCCGTGAGGGTTTCTCGGTGCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTGAACGGCCGCGAGGCCGTCACCCAGGTCGCGGCCCTCGCCCCGGACGTCGTCCTGA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGACGCGACTCGCGAGATCGTGGCGGCGGACGCGGACGCGAAGGTACTG
GTCCTGACGACGTTCGATCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGTGCCTCCGGCTTCCTTCTGAAGGACGC
CTCGGCACGCCAACTGGCCGACGGGGTAAGGGTGGTGGCGTCCGGCGAGGCCCTGCTGGCGCCGACGGTGACGCGTCGGC
TGATCACCGAGTTCTCCAAACTCGCGGAGGCCCCGCGCCCGCCCGCGCTGGCACAGATGGGCGAGCTGACGGAGCGCGAG
ACGGAGGTCCTGGTCCTGATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCAGCCATCTGGTGGTGGCCGAGTCCACGAT
CAAGACGCACGTGAGCCGGATCCTGGTGAAGCTGGGGCTGCGGGACCGCACACAGGCGGCGGTGTTCGCGTACGAGGCGA
GACTGGTCACACCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

98.63

0.452
  degU Bacillus subtilis subsp. subtilis str. 168

41.935

99.087

0.416