Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG467_RS23675 Genome accession   NZ_CP109589
Coordinates   5262651..5263775 (-) Length   374 a.a.
NCBI ID   WP_329572168.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5257651..5268775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS23665 (OG467_23715) gyrB 5259741..5261837 (-) 2097 WP_329572165.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OG467_RS23670 (OG467_23720) - 5262112..5262654 (-) 543 WP_100597235.1 DciA family protein -
  OG467_RS23675 (OG467_23725) recF 5262651..5263775 (-) 1125 WP_329572168.1 DNA replication/repair protein RecF Machinery gene
  OG467_RS23680 (OG467_23730) gnd 5263867..5264742 (-) 876 WP_329572170.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG467_RS23685 (OG467_23735) dnaN 5264920..5266050 (-) 1131 WP_116512073.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40928.59 Da        Isoelectric Point: 6.7123

>NTDB_id=679268 OG467_RS23675 WP_329572168.1 5262651..5263775(-) (recF) [Streptomyces sp. NBC_01361]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIATLQPLADKAYEQLAPGGGPLALDYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLILKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRYAVSEGTVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=679268 OG467_RS23675 WP_329572168.1 5262651..5263775(-) (recF) [Streptomyces sp. NBC_01361]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGTCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGACCGCGCCGTCATCCGGGCCGCGGTCCGGCAGGGCGAGCGCCAG
CAGCTCATCGAGCTCGAGCTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCTCGTGA
CGTGCTCGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTCCTCGACGAACTGATCACCGCCCGTTCCCCGCGCATGGCCGGCGTGCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCAATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCGACCTGATCGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAGCAGTTGGCGCCCGGCGGCGGCCCGCTCGCCCTCGACTACAAGCCGTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAACAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTCAC
CCTCGTCGGACCGCACCGCGACGACCTGATACTCAAGCTCGGCCAGCTGCCGGCGAAGGGGTACGCCAGCCACGGCGAGT
CCTGGTCGTACGCGCTGGCTCTGCGCCTGGCCTCGTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGTCTCGCCGAGCTGGTCGCCCCAGGCGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGATGTGCCGGGCGTCCTGGCGGGCACGCGGTACGCGGTGTCCGAAGGAACGGTGGAGCGGG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361