Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   OG741_RS11710 Genome accession   NZ_CP109530
Coordinates   2546532..2546906 (+) Length   124 a.a.
NCBI ID   WP_405596785.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541532..2551906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS11690 (OG741_11675) - 2541710..2544721 (-) 3012 WP_405596779.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase -
  OG741_RS11695 (OG741_11680) - 2544901..2545413 (+) 513 WP_405596781.1 pyridoxamine 5'-phosphate oxidase family protein -
  OG741_RS11700 (OG741_11685) - 2545445..2545876 (+) 432 WP_405605518.1 VOC family protein -
  OG741_RS11705 (OG741_11690) - 2546158..2546532 (+) 375 WP_405596783.1 response regulator -
  OG741_RS11710 (OG741_11695) chiS 2546532..2546906 (+) 375 WP_405596785.1 response regulator transcription factor Regulator
  OG741_RS11715 (OG741_11700) - 2546903..2548003 (+) 1101 WP_405596787.1 HEAT repeat domain-containing protein -
  OG741_RS11720 (OG741_11705) - 2548000..2549544 (+) 1545 WP_405596788.1 glycosyltransferase -
  OG741_RS11725 (OG741_11710) - 2549541..2551643 (+) 2103 WP_405596790.1 ATP-binding protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13128.99 Da        Isoelectric Point: 4.5296

>NTDB_id=678315 OG741_RS11710 WP_405596785.1 2546532..2546906(+) (chiS) [Streptomyces sp. NBC_01410]
MPRVLIADDDGDIRDLVAFKLTQSGHEVIAVEDGAAALKAAQSQPVDVALLDIRMPGMSGLDVCRALRAAPETASLPVIL
ITARSQEGDVETGFAAGADDYIIKPFSPRELSSRVQAVLTRASR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=678315 OG741_RS11710 WP_405596785.1 2546532..2546906(+) (chiS) [Streptomyces sp. NBC_01410]
ATGCCTCGAGTCCTCATAGCCGATGACGATGGCGACATACGGGACCTCGTCGCGTTCAAACTGACCCAGAGCGGTCATGA
GGTCATCGCCGTGGAGGACGGCGCCGCCGCGCTCAAGGCAGCGCAGAGCCAACCGGTCGATGTCGCTCTGCTCGACATAC
GCATGCCCGGGATGTCCGGCCTGGATGTGTGCCGCGCCCTCCGCGCGGCGCCCGAGACCGCCTCGCTCCCCGTCATCCTG
ATCACTGCCCGCTCCCAGGAGGGAGACGTCGAGACGGGATTCGCCGCGGGAGCCGACGACTACATCATCAAGCCGTTCAG
CCCGCGCGAACTGAGCAGCCGGGTCCAGGCCGTGCTCACCAGGGCCTCCCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

44.167

96.774

0.427
  micA Streptococcus pneumoniae Cp1015

38.211

99.194

0.379
  vicR Streptococcus mutans UA159

37.398

99.194

0.371
  scnR Streptococcus mutans UA159

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae TIGR4

36.29

100

0.363
  ciaR Streptococcus pneumoniae Rx1

36.29

100

0.363
  ciaR Streptococcus pneumoniae D39

36.29

100

0.363
  ciaR Streptococcus pneumoniae R6

36.29

100

0.363