Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUG87_RS12480 Genome accession   NZ_CP095462
Coordinates   2432744..2433247 (-) Length   167 a.a.
NCBI ID   WP_247082588.1    Uniprot ID   -
Organism   Ectobacillus sp. JY-23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2427744..2438247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG87_RS12460 (MUG87_12460) rplI 2428968..2429414 (-) 447 WP_247082582.1 50S ribosomal protein L9 -
  MUG87_RS12465 (MUG87_12465) - 2429411..2431384 (-) 1974 WP_247082584.1 DHH family phosphoesterase -
  MUG87_RS12470 (MUG87_12470) - 2431464..2432399 (-) 936 WP_247082586.1 YybS family protein -
  MUG87_RS12475 (MUG87_12475) rpsR 2432467..2432700 (-) 234 WP_124565771.1 30S ribosomal protein S18 -
  MUG87_RS12480 (MUG87_12480) ssbA 2432744..2433247 (-) 504 WP_247082588.1 single-stranded DNA-binding protein Machinery gene
  MUG87_RS12485 (MUG87_12485) rpsF 2433272..2433559 (-) 288 WP_247082590.1 30S ribosomal protein S6 -
  MUG87_RS12490 (MUG87_12490) ychF 2433859..2434959 (-) 1101 WP_247082593.1 redox-regulated ATPase YchF -
  MUG87_RS12495 (MUG87_12495) - 2435301..2435498 (-) 198 WP_247082595.1 DUF951 domain-containing protein -
  MUG87_RS12500 (MUG87_12500) - 2435517..2436314 (-) 798 Protein_2470 mechanosensitive ion channel family protein -
  MUG87_RS12505 (MUG87_12505) yyaC 2436655..2437239 (+) 585 WP_247082598.1 spore protease YyaC -
  MUG87_RS12510 (MUG87_12510) - 2437267..2438112 (-) 846 WP_247082600.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18267.07 Da        Isoelectric Point: 4.9528

>NTDB_id=676969 MUG87_RS12480 WP_247082588.1 2432744..2433247(-) (ssbA) [Ectobacillus sp. JY-23]
MMNRVLLVGRLTKDPELRYTPNGIAVATFTLAVNRTFSNQQGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRLSTR
NYEGQDGKRVYVTEVVADSVQFLETRSSGNNEQRGSFAPQPSGFGYNDQGSNPFGSSGNSRPSAPRNDDPFANAGQPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=676969 MUG87_RS12480 WP_247082588.1 2432744..2433247(-) (ssbA) [Ectobacillus sp. JY-23]
ATGATGAATCGCGTTTTACTCGTAGGTCGCTTAACTAAAGATCCGGAATTGCGTTATACGCCAAATGGCATCGCGGTAGC
TACTTTCACGTTGGCAGTAAATCGCACGTTCTCAAATCAGCAAGGCGAACGCGAAGCTGATTTTATTAACTGTGTTGTAT
GGAGAAAGCCTGCTGAAAATGTGGCGAACTACCTGAAAAAGGGAAGTCTTGCCGGTGTGGACGGTCGTCTTAGCACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTGTATGTGACAGAAGTTGTTGCGGATAGCGTTCAATTTTTGGAGACAAGGTC
AAGTGGAAACAACGAGCAGCGTGGCTCATTTGCACCGCAGCCATCGGGCTTTGGTTACAATGATCAAGGCTCTAACCCAT
TCGGATCTTCTGGGAATAGTCGCCCTAGTGCGCCTCGGAACGATGATCCATTTGCAAATGCAGGTCAACCGATTGATATT
TCGGACGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

59.091

100

0.623
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.462

62.275

0.395
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.383
  ssb Neisseria meningitidis MC58

35.754

100

0.383
  ssb Glaesserella parasuis strain SC1401

35.754

100

0.383