Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FIS3754_RS13905 Genome accession   NZ_AP017305
Coordinates   3383520..3383885 (-) Length   121 a.a.
NCBI ID   WP_009454479.1    Uniprot ID   A0A0S3TPP0
Organism   Fischerella sp. NIES-3754     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378520..3388885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIS3754_RS13895 (FIS3754_29380) - 3380053..3382959 (-) 2907 WP_062247415.1 methyl-accepting chemotaxis protein -
  FIS3754_RS13900 (FIS3754_29390) - 3382976..3383506 (-) 531 WP_062247417.1 chemotaxis protein CheW -
  FIS3754_RS13905 (FIS3754_29400) pilH 3383520..3383885 (-) 366 WP_009454479.1 response regulator Machinery gene
  FIS3754_RS13910 (FIS3754_29410) - 3384054..3385265 (-) 1212 WP_062247418.1 response regulator -
  FIS3754_RS13915 (FIS3754_29420) hmpF 3385637..3387391 (+) 1755 WP_062247420.1 pilus motility taxis protein HmpF -
  FIS3754_RS13920 (FIS3754_29430) tilS 3387605..3388615 (-) 1011 WP_062250636.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13336.50 Da        Isoelectric Point: 4.8604

>NTDB_id=67643 FIS3754_RS13905 WP_009454479.1 3383520..3383885(-) (pilH) [Fischerella sp. NIES-3754]
MSTVLIVEDSIAQREMITDLLKASGLTVTHATDGVEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=67643 FIS3754_RS13905 WP_009454479.1 3383520..3383885(-) (pilH) [Fischerella sp. NIES-3754]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCACAAAGGGAGATGATCACAGACCTCCTGAAAGCAAGTGGCTTAAC
AGTAACCCATGCCACTGACGGAGTAGAAGCGTTGGAAGCAATTCAAATAGCTCCTCCTGATTTAGTGGTATTAGATATTG
TCATGCCCCGAATGAATGGCTACGAAGTTTGCCGCCGACTAAAGTCCGACCCCAAAACCCAAAATGTCCCCGTCGTCATG
TGTTCTTCCAAAGGAGAAGAATTTGATCGTTATTGGGGGATGAAACAAGGTGCAGACGCCTACATAGCCAAACCATTCCA
ACCAACTGAGTTGGTGGGAACAGTCAAACAACTACTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3TPP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

77.686

100

0.777
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment