Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MRO13_RS09335 Genome accession   NZ_CP095311
Coordinates   2017519..2017812 (-) Length   97 a.a.
NCBI ID   WP_004395641.1    Uniprot ID   A0A9X0R6S7
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012519..2022812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS09310 (MRO13_09265) lapB 2012874..2014043 (-) 1170 WP_004395636.1 lipopolysaccharide assembly protein LapB -
  MRO13_RS09315 (MRO13_09270) - 2014047..2014331 (-) 285 WP_004395637.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  MRO13_RS09320 (MRO13_09275) ihfB 2014490..2014774 (-) 285 WP_004395638.1 integration host factor subunit beta -
  MRO13_RS09325 (MRO13_09280) rpsA 2014906..2016576 (-) 1671 WP_004395639.1 30S ribosomal protein S1 -
  MRO13_RS09330 (MRO13_09285) cmk 2016681..2017361 (-) 681 WP_040904501.1 (d)CMP kinase -
  MRO13_RS09335 (MRO13_09290) comEA 2017519..2017812 (-) 294 WP_004395641.1 helix-hairpin-helix domain-containing protein Machinery gene
  MRO13_RS09340 (MRO13_09295) ppiD 2018048..2019907 (-) 1860 WP_350939492.1 peptidylprolyl isomerase -
  MRO13_RS09345 (MRO13_09300) - 2020060..2020332 (-) 273 WP_004395643.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10512.25 Da        Isoelectric Point: 5.0354

>NTDB_id=676290 MRO13_RS09335 WP_004395641.1 2017519..2017812(-) (comEA) [Vibrio metschnikovii strain 20CO01TI02]
MVKNYLLALLLGLSLPVSQAMSEETVSVNQGFEITVNVNTASAEEIATLLQGIGLQKAQAIVEYREINGQFLTKEDLTKV
KGIGPAIVARNDKRILL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=676290 MRO13_RS09335 WP_004395641.1 2017519..2017812(-) (comEA) [Vibrio metschnikovii strain 20CO01TI02]
ATGGTTAAGAATTATTTACTTGCCCTGCTGTTGGGCTTAAGCCTGCCTGTTAGCCAAGCGATGAGCGAAGAAACGGTCAG
CGTTAATCAGGGCTTTGAGATCACAGTGAATGTTAATACCGCCTCGGCAGAAGAGATCGCGACTTTGTTACAAGGCATTG
GCTTGCAAAAAGCTCAGGCGATTGTTGAATACCGTGAGATAAATGGTCAGTTTTTAACAAAAGAAGATCTAACTAAAGTG
AAGGGAATCGGGCCAGCAATCGTGGCAAGAAACGATAAACGTATTTTACTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(34-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

57.426

100

0.598
  comEA Vibrio cholerae strain A1552

57.426

100

0.598
  comEA Vibrio campbellii strain DS40M4

55.914

95.876

0.536
  comEA Vibrio parahaemolyticus RIMD 2210633

53.763

95.876

0.515
  comEA/comE1 Glaesserella parasuis strain SC1401

44.34

100

0.485
  comEA Acinetobacter baylyi ADP1

41.176

87.629

0.361