Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG607_RS31450 Genome accession   NZ_CP109392
Coordinates   6844083..6845117 (-) Length   344 a.a.
NCBI ID   WP_405730646.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01537 strain NBC 01537     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6839083..6850117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG607_RS31430 (OG607_31335) - 6839208..6840647 (-) 1440 WP_405730639.1 glycoside hydrolase family 32 protein -
  OG607_RS31435 (OG607_31340) - 6840736..6841650 (-) 915 WP_405730641.1 carbohydrate ABC transporter permease -
  OG607_RS31440 (OG607_31345) - 6841652..6842605 (-) 954 WP_405730643.1 carbohydrate ABC transporter permease -
  OG607_RS31445 (OG607_31350) - 6842681..6843958 (-) 1278 WP_405730645.1 extracellular solute-binding protein -
  OG607_RS31450 (OG607_31355) cytR 6844083..6845117 (-) 1035 WP_405730646.1 LacI family DNA-binding transcriptional regulator Regulator
  OG607_RS31455 (OG607_31360) - 6845607..6849383 (+) 3777 WP_405730648.1 family 78 glycoside hydrolase catalytic domain -
  OG607_RS31460 (OG607_31365) - 6849584..6849751 (+) 168 WP_405730650.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36727.25 Da        Isoelectric Point: 5.9832

>NTDB_id=675413 OG607_RS31450 WP_405730646.1 6844083..6845117(-) (cytR) [Streptomyces sp. NBC_01537 strain NBC 01537]
MGKRVGIKDVAAAADVSVTTVSHILNNVEGKRINPETRQRVLEAARRLGYAPNGLARGLRLKRSNTVGFVSDEIATTPYA
GRIILGAQEAAAEQGLLLLMLNTGGNPELERKEIDLLLQRQVDGVLYASMFHRVVEVPDGLRSVPTVLLDARSDDLTVPS
VVPDEVLGGYTAVRELLDHGHRRIGFVNNLDDIPATHGRLKGYRAALAEAAIADDPDLVVTETADSAGGYRAARRLLEGV
ARPTALFCFNDRMAMGAYRAAAELGLSIPADLSVIGFDNQELICEGVFPKLTTVALPHYEMGARAITQLLALIEAPGPIA
GPAAQEMLPCPLVARASVAPPPRL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=675413 OG607_RS31450 WP_405730646.1 6844083..6845117(-) (cytR) [Streptomyces sp. NBC_01537 strain NBC 01537]
ATGGGCAAGCGGGTCGGGATCAAGGATGTGGCGGCGGCAGCCGACGTCTCGGTCACGACCGTCTCCCACATCCTCAACAA
TGTCGAGGGCAAGCGGATCAATCCGGAGACCCGGCAGCGGGTCCTGGAGGCGGCCCGGCGGCTGGGGTACGCGCCGAACG
GCCTGGCGCGCGGGCTGCGTCTGAAGCGTTCGAACACGGTGGGCTTCGTCAGCGACGAGATCGCCACGACGCCGTACGCC
GGGCGGATCATCCTGGGGGCCCAGGAGGCGGCAGCCGAGCAGGGCCTGCTGCTGCTCATGCTGAACACCGGGGGCAATCC
GGAGCTGGAACGCAAGGAGATCGACCTGCTGTTGCAGCGGCAGGTCGACGGTGTGCTGTACGCGTCGATGTTCCACCGGG
TCGTGGAGGTCCCGGACGGCCTTCGCTCGGTGCCGACCGTACTGCTGGACGCGCGCTCGGACGACCTCACCGTGCCGTCG
GTGGTGCCGGACGAGGTCCTCGGCGGCTACACGGCGGTGCGCGAACTGCTCGACCACGGCCACCGCCGGATCGGCTTCGT
CAACAACCTGGACGACATCCCGGCCACTCACGGACGGCTGAAGGGCTACCGGGCCGCCCTCGCCGAGGCCGCCATCGCCG
ATGACCCGGACCTGGTGGTGACGGAAACAGCCGACTCCGCCGGAGGGTACCGGGCGGCGCGCCGGCTCCTGGAGGGGGTG
GCGCGGCCCACCGCGTTGTTCTGCTTCAACGACAGGATGGCGATGGGCGCCTACCGGGCGGCTGCCGAGCTGGGGCTGTC
CATCCCGGCGGACCTGTCGGTCATCGGATTCGACAACCAGGAGCTGATCTGCGAGGGCGTGTTCCCCAAGCTGACCACGG
TCGCCCTGCCGCACTACGAGATGGGGGCACGGGCGATCACCCAGTTGCTCGCCCTCATCGAAGCACCGGGCCCGATCGCG
GGCCCGGCCGCGCAAGAGATGCTGCCCTGCCCGCTCGTGGCACGGGCTTCGGTCGCTCCGCCGCCCCGACTCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-338)

Bacterial regulatory proteins, lacI family (LacI)

(7-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.059

98.837

0.366