Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA87_RS06475 Genome accession   NZ_CP095100
Coordinates   1387463..1387798 (+) Length   111 a.a.
NCBI ID   WP_262550312.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6189     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382463..1392798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA87_RS06445 (MUA87_06440) - 1383231..1383431 (+) 201 WP_002481044.1 YqgQ family protein -
  MUA87_RS06450 (MUA87_06445) - 1383431..1384417 (+) 987 WP_002481043.1 ROK family glucokinase -
  MUA87_RS06455 (MUA87_06450) - 1384417..1384746 (+) 330 WP_002481042.1 MTH1187 family thiamine-binding protein -
  MUA87_RS06460 (MUA87_06455) - 1384746..1385369 (+) 624 WP_057510470.1 MBL fold metallo-hydrolase -
  MUA87_RS06465 (MUA87_06460) comGA 1385426..1386400 (+) 975 WP_002481040.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA87_RS06470 (MUA87_06465) comGB 1386372..1387445 (+) 1074 WP_262550310.1 competence type IV pilus assembly protein ComGB -
  MUA87_RS06475 (MUA87_06470) comGC 1387463..1387798 (+) 336 WP_262550312.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA87_RS06480 (MUA87_06475) comGD 1387795..1388220 (+) 426 WP_002481037.1 competence type IV pilus minor pilin ComGD -
  MUA87_RS06485 (MUA87_06480) comGF 1388439..1388933 (+) 495 WP_262550314.1 competence type IV pilus minor pilin ComGF -
  MUA87_RS06490 (MUA87_06485) - 1389098..1389637 (+) 540 WP_002481034.1 shikimate kinase -
  MUA87_RS06495 (MUA87_06490) gcvT 1389816..1390910 (+) 1095 WP_023015155.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA87_RS06500 (MUA87_06495) gcvPA 1390932..1392281 (+) 1350 WP_057510473.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12285.45 Da        Isoelectric Point: 9.9608

>NTDB_id=675408 MUA87_RS06475 WP_262550312.1 1387463..1387798(+) (comGC) [Staphylococcus simulans strain IVB6189]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSVDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQKS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=675408 MUA87_RS06475 WP_262550312.1 1387463..1387798(+) (comGC) [Staphylococcus simulans strain IVB6189]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGCGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTGAATAAAAATAGAGCGCCTTCTTCAGTCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCTGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAAAAGTCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

71.579

85.586

0.613
  comGC Staphylococcus aureus MW2

71.579

85.586

0.613
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

94.595

0.396
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

86.486

0.369
  comGC/cglC Streptococcus mitis SK321

46.067

80.18

0.369
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

80.18

0.369
  comGC/cglC Streptococcus pneumoniae D39

44.944

80.18

0.36
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

80.18

0.36
  comGC/cglC Streptococcus pneumoniae R6

44.944

80.18

0.36