Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA90_RS07235 Genome accession   NZ_CP095096
Coordinates   1480727..1481056 (+) Length   109 a.a.
NCBI ID   WP_262585991.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6181     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475727..1486056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA90_RS07205 (MUA90_07205) - 1476494..1476694 (+) 201 WP_105992691.1 YqgQ family protein -
  MUA90_RS07210 (MUA90_07210) - 1476694..1477680 (+) 987 WP_114603277.1 ROK family glucokinase -
  MUA90_RS07215 (MUA90_07215) - 1477680..1478009 (+) 330 WP_105992693.1 MTH1187 family thiamine-binding protein -
  MUA90_RS07220 (MUA90_07220) - 1478009..1478632 (+) 624 WP_262585988.1 MBL fold metallo-hydrolase -
  MUA90_RS07225 (MUA90_07225) comGA 1478699..1479664 (+) 966 Protein_1385 competence type IV pilus ATPase ComGA -
  MUA90_RS07230 (MUA90_07230) comGB 1479636..1480709 (+) 1074 WP_262585990.1 competence type IV pilus assembly protein ComGB -
  MUA90_RS07235 (MUA90_07235) comGC 1480727..1481056 (+) 330 WP_262585991.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA90_RS07240 (MUA90_07240) - 1481074..1481484 (+) 411 WP_262585993.1 prepilin-type cleavage/methylation domain-containing protein -
  MUA90_RS07245 (MUA90_07245) - 1481468..1481788 (+) 321 WP_262585995.1 hypothetical protein -
  MUA90_RS14085 (MUA90_07250) - 1481841..1482197 (+) 357 WP_398577384.1 competence type IV pilus minor pilin ComGF -
  MUA90_RS07250 (MUA90_07255) - 1482362..1482883 (+) 522 WP_262585996.1 shikimate kinase -
  MUA90_RS07255 (MUA90_07260) gcvT 1483081..1484175 (+) 1095 WP_114603286.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA90_RS07260 (MUA90_07265) gcvPA 1484197..1485543 (+) 1347 WP_262585999.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12129.33 Da        Isoelectric Point: 10.0352

>NTDB_id=675381 MUA90_RS07235 WP_262585991.1 1480727..1481056(+) (comGC) [Staphylococcus sp. IVB6181]
MKKLLSKLKQRHFKAFTLLEMMLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFSLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTISISDGEAKVNE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=675381 MUA90_RS07235 WP_262585991.1 1480727..1481056(+) (comGC) [Staphylococcus sp. IVB6181]
ATGAAAAAATTATTATCAAAATTAAAACAGCGTCATTTTAAAGCTTTTACATTACTAGAAATGATGTTAGTCCTTTTAGT
TATAAGCGTCCTATTAATTTTAATCATTCCAAATATCGCAAAACAATCTAAACATGTGCAAGATACAGGGTGCGAAGCAC
AGCAAAAAATGGTGAATAGCCAAATTGAAGCGTTCAGTTTGAATAAAAACAGAGCGCCATCATCCATCGATGAGCTTGTA
AGTGAAGGTTTCTTAAAAGAAGGACAAAAAACATGCAAATCCGGCAAGACAATATCTATCAGTGATGGCGAAGCTAAAGT
TAATGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

70.526

87.156

0.615
  comGC Staphylococcus aureus N315

70.526

87.156

0.615
  comGC/cglC Streptococcus pneumoniae Rx1

44.144

100

0.45
  comGC/cglC Streptococcus pneumoniae R6

44.144

100

0.45
  comGC/cglC Streptococcus pneumoniae D39

44.144

100

0.45
  comGC/cglC Streptococcus pneumoniae TIGR4

44.144

100

0.45
  comGC/cglC Streptococcus mitis NCTC 12261

48.315

81.651

0.394
  comGC/cglC Streptococcus mitis SK321

48.315

81.651

0.394
  comGC Bacillus subtilis subsp. subtilis str. 168

44.681

86.239

0.385