Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OG278_RS33890 Genome accession   NZ_CP109337
Coordinates   7592742..7593041 (-) Length   99 a.a.
NCBI ID   WP_328334414.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00455     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7587742..7598041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG278_RS33865 (OG278_33895) - 7587769..7588221 (-) 453 WP_328334404.1 type II toxin-antitoxin system PemK/MazF family toxin -
  OG278_RS33870 (OG278_33900) - 7588293..7589372 (+) 1080 WP_328334406.1 glycosyl hydrolase family 18 protein -
  OG278_RS33875 (OG278_33905) - 7589497..7590681 (+) 1185 WP_328334408.1 thiolase family protein -
  OG278_RS33880 (OG278_33910) trxA 7590817..7591182 (-) 366 WP_328334410.1 thioredoxin -
  OG278_RS33885 (OG278_33915) - 7591300..7592733 (+) 1434 WP_328334412.1 NAD(P)/FAD-dependent oxidoreductase -
  OG278_RS33890 (OG278_33920) pilT 7592742..7593041 (-) 300 WP_328334414.1 hypothetical protein Machinery gene
  OG278_RS33895 (OG278_33925) - 7593226..7594272 (-) 1047 WP_328334416.1 glucose 1-dehydrogenase -
  OG278_RS33900 (OG278_33930) - 7594657..7595328 (+) 672 WP_328334418.1 HAD family hydrolase -
  OG278_RS33905 (OG278_33935) - 7595412..7596290 (+) 879 WP_328334420.1 SDR family NAD(P)-dependent oxidoreductase -
  OG278_RS33910 (OG278_33940) - 7596458..7597939 (-) 1482 WP_328334422.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10407.04 Da        Isoelectric Point: 10.3932

>NTDB_id=674534 OG278_RS33890 WP_328334414.1 7592742..7593041(-) (pilT) [Streptomyces sp. NBC_00455]
MAHTLVGILNQTLIPRIGGGRMAAFEVLVGTSAIRNLIREGKTRQIRNLIATGHRDGMQTLETSINALVAAGAVASGEAV
LCTASPEDIQRPYVPAGRT

Nucleotide


Download         Length: 300 bp        

>NTDB_id=674534 OG278_RS33890 WP_328334414.1 7592742..7593041(-) (pilT) [Streptomyces sp. NBC_00455]
TTGGCGCACACCCTGGTCGGCATCCTCAACCAGACGCTCATCCCCCGGATCGGCGGGGGCCGGATGGCCGCCTTCGAGGT
GCTGGTAGGAACGTCGGCTATCCGCAACCTGATCCGCGAAGGCAAAACCCGCCAGATCCGCAACCTGATCGCAACCGGCC
ACCGTGACGGCATGCAGACCCTGGAGACCAGCATCAACGCCCTCGTCGCGGCAGGCGCCGTCGCCTCCGGGGAGGCCGTG
CTGTGCACGGCCTCCCCGGAGGACATCCAGCGGCCCTACGTCCCGGCCGGCCGCACCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

44.944

89.899

0.404
  pilT Acinetobacter baylyi ADP1

43.678

87.879

0.384
  pilT Acinetobacter baumannii D1279779

42.529

87.879

0.374
  pilT Acinetobacter baumannii strain A118

42.529

87.879

0.374
  pilT Pseudomonas stutzeri DSM 10701

41.573

89.899

0.374
  pilT Acinetobacter nosocomialis M2

41.379

87.879

0.364