Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SITYG_RS08105 Genome accession   NZ_AP014880
Coordinates   1593280..1595259 (-) Length   659 a.a.
NCBI ID   WP_096363110.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588280..1600259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08085 (SITYG_15950) amiF 1588474..1589397 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SITYG_RS08090 (SITYG_15960) amiE 1589408..1590475 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08095 (SITYG_15970) amiD 1590484..1591410 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SITYG_RS08100 (SITYG_15980) amiC 1591410..1592906 (-) 1497 WP_096363109.1 ABC transporter permease Regulator
  SITYG_RS08105 (SITYG_15990) amiA3 1593280..1595259 (-) 1980 WP_096363110.1 peptide ABC transporter substrate-binding protein Regulator
  SITYG_RS08110 (SITYG_16000) amiA3 1595456..1597432 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  SITYG_RS08115 (SITYG_16010) - 1597591..1598280 (-) 690 WP_003074396.1 B3/4 domain-containing protein -
  SITYG_RS08120 (SITYG_16020) - 1598502..1600115 (-) 1614 WP_020999097.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73392.08 Da        Isoelectric Point: 8.3316

>NTDB_id=67275 SITYG_RS08105 WP_096363110.1 1593280..1595259(-) (amiA3) [Streptococcus intermedius strain TYG1620]
MKKSKIIALTAVALFATGTLAACSGSKTGSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSAVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSILYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDHIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDSGKNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHIK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=67275 SITYG_RS08105 WP_096363110.1 1593280..1595259(-) (amiA3) [Streptococcus intermedius strain TYG1620]
ATGAAGAAAAGTAAAATCATTGCCTTAACGGCTGTTGCCTTATTCGCGACGGGGACATTAGCGGCTTGTTCTGGTTCTAA
AACAGGTTCTAGTAACAAAACGTTTTCGTATGTTTATGAACAAGATCCGGATAATCTAGATTATCTGACAACTGGGAAGG
CCTCTACTTCAAACATTACAAGTAACGTCATTGATGGCCTCTTGGAAAATGACCGTTATGGGAACTTAATTCCTTCTGTG
GCAAAAGATTGGACCGTCTCTAAAGACGGCTTGACTTACACTTACAAACTTCGCAAGGGAGTTAAATGGTATACTTCAGA
AGGGGAAGAGTATGCAGAAGTTAAAGCGCAAGACTTTGTGACAGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCCA
TTTATTTGGTGCAAGATTCCATTAAAGGTTTGGATGCTTATATGAAAGGTGAAAATAAAGATTTTTCTGCTGTTGGTATT
AAAGCAGTTGATGATTATACCGTCCAATACACGCTTAATCGACCAGAAAGCTTTTGGAACTCGAAAACAACAATGGGAGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCGCAAGCAACAGATCCATCTAGTATTCTTT
ACAATGGACCTTACTTGCTAAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTATTGGGATAAG
AAAAACGTGCACATTGATCACATCAAGTTATCTTACTATGATGGTCAGGATCAGGATAAACTGGCTAAAGGATTTAGCGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACCAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATCGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCGCCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTTGGTTACGATGAAAGTTGGAAAGATGTCAAT
TTAAATGATGCGCAAGACGGGCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCTAAAGCCAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCGATTCACATTGATATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAGAATCTTGGCAAAGAAAATGTTGTGATTGATATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCTGCTGCAGAGGATTGGGATCTTTCAGACAATGTTGGTTGGAGTCCAGATTTCCA
AGATCCATCTACTTATCTTGATGTCATCAAGCCTTCAAGTGGTGAAAATACTAAGACTTATCTAGGATTTGATTCAGGTA
AAAATAATGCTGCTGCGGCACAAGTTGGTATGAATGAATATGAAAAATTACTGAATGAGGCCGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAGTATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.515

100

0.616
  amiA3 Streptococcus thermophilus LMG 18311

60.909

100

0.61
  amiA Streptococcus salivarius strain HSISS4

60.606

100

0.607

Multiple sequence alignment