Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SITYG_RS08100 Genome accession   NZ_AP014880
Coordinates   1591410..1592906 (-) Length   498 a.a.
NCBI ID   WP_096363109.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1586410..1597906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08075 (SITYG_15930) - 1586478..1587443 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  SITYG_RS08080 (SITYG_15940) - 1587529..1588347 (-) 819 WP_096363108.1 Cof-type HAD-IIB family hydrolase -
  SITYG_RS08085 (SITYG_15950) amiF 1588474..1589397 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SITYG_RS08090 (SITYG_15960) amiE 1589408..1590475 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08095 (SITYG_15970) amiD 1590484..1591410 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SITYG_RS08100 (SITYG_15980) amiC 1591410..1592906 (-) 1497 WP_096363109.1 ABC transporter permease Regulator
  SITYG_RS08105 (SITYG_15990) amiA3 1593280..1595259 (-) 1980 WP_096363110.1 peptide ABC transporter substrate-binding protein Regulator
  SITYG_RS08110 (SITYG_16000) amiA3 1595456..1597432 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55902.05 Da        Isoelectric Point: 10.0131

>NTDB_id=67274 SITYG_RS08100 WP_096363109.1 1591410..1592906(-) (amiC) [Streptococcus intermedius strain TYG1620]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENSSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKHADVRDVANYGKDDPYTATESNYQYPSMLVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=67274 SITYG_RS08100 WP_096363109.1 1591410..1592906(-) (amiC) [Streptococcus intermedius strain TYG1620]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTTAAACAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATTCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTCTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTAAGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTTCCTGTTC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCGTCTGTT
AATATTTACACGCGTACCTATAAGTCTCCAAAACACGCTGATGTGCGAGATGTTGCTAATTACGGGAAAGACGATCCTTA
TACAGCAACAGAAAGCAACTATCAGTATCCATCAATGCTTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTGGCATTGT
CTTACTTAATTGCTGTGCCATTAGGCTCTTATATGGCTCGTTTTAAGAATACATTGTTTGACAGTATTTCAACTGGTGCT
TTGACTTTCTTAATGTCGCTGCCAACCATTGCTTTGGTTTATATCATTCGCTTGATTGGTTCAGCAATAGGATTGCCAGA
TTCCTTCCCTATTTTAGGTGCAGGAGATTGGCGTTCTTATGTGTTGCCAGCAGTCATTCTTGGACTGTTGAGTGCGCCTT
GGACTGCTGTTTGGATTCGCCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCTCGGGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCTATGGTACCACTTGTATCCAGCATACCTGGTGCTATTAT
TGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.522

100

0.805
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793

Multiple sequence alignment