Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SITYG_RS08110 Genome accession   NZ_AP014880
Coordinates   1595456..1597432 (-) Length   658 a.a.
NCBI ID   WP_003076197.1    Uniprot ID   A0AAD1FJY5
Organism   Streptococcus intermedius strain TYG1620     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590456..1602432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08095 (SITYG_15970) amiD 1590484..1591410 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SITYG_RS08100 (SITYG_15980) amiC 1591410..1592906 (-) 1497 WP_096363109.1 ABC transporter permease Regulator
  SITYG_RS08105 (SITYG_15990) amiA3 1593280..1595259 (-) 1980 WP_096363110.1 peptide ABC transporter substrate-binding protein Regulator
  SITYG_RS08110 (SITYG_16000) amiA3 1595456..1597432 (-) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  SITYG_RS08115 (SITYG_16010) - 1597591..1598280 (-) 690 WP_003074396.1 B3/4 domain-containing protein -
  SITYG_RS08120 (SITYG_16020) - 1598502..1600115 (-) 1614 WP_020999097.1 CTP synthase -
  SITYG_RS08125 (SITYG_16030) rpoE 1600358..1600945 (-) 588 WP_003074392.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72211.02 Da        Isoelectric Point: 9.2806

>NTDB_id=67276 SITYG_RS08110 WP_003076197.1 1595456..1597432(-) (amiA3) [Streptococcus intermedius strain TYG1620]
MKKGKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDKIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGAGTAALALNIDRQSYKHTAKK
TDEQKNSTKKALLNKDFRQALNFALDRESYAAQVNGKAGAATAIRNMFVPSNFVQVGEKSFGDAVEEKLASYGDTWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NITYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSLTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDKLADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=67276 SITYG_RS08110 WP_003076197.1 1595456..1597432(-) (amiA3) [Streptococcus intermedius strain TYG1620]
ATGAAAAAAGGTAAAATCATCGCAGTTGCGGGGTTAGCTCTTTTAACTTCTGGCCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCCGCTGAAACCAAGTTCGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACTACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAGTATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAAGCTC
TTTATTTGGTTCAAAATTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGATTTTTCAACAGTAGGTGTG
AAAGCAGTTGATGACTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCCAAGACCACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGATCCTAATTCTATCCTTT
ATAATGGGCCATTCCTGATGAAAGCTATCACAGCGAAATCTGCAGTAGAATATGTTAAAAATAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAAGATTAAACTTGCTTACTATGATGGTCAAGACCAAGACTCTCTTGCGCGTAACTTTAAAGA
TGGAGCTTACTCTTATGCTCGTCTCTTCCCAACAAGCTCAAACTTTGCAACTTTTGAAAAGCAGTTCAAAGATAATATCT
ATACTGCAGAAGCAGGTGCAGGAACAGCAGCTTTAGCATTGAATATCGATCGTCAATCATACAAGCATACTGCCAAAAAG
ACAGATGAGCAAAAGAATTCAACGAAAAAAGCATTGTTGAACAAAGACTTCCGCCAAGCTCTAAACTTTGCACTGGATCG
TGAATCTTACGCAGCACAAGTCAATGGTAAAGCTGGAGCTGCCACAGCAATCCGCAATATGTTTGTGCCATCTAACTTTG
TTCAAGTTGGTGAAAAATCATTTGGTGATGCTGTAGAAGAAAAATTAGCGAGCTATGGTGATACATGGAAGGGTGTTAAA
CTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTGGAAACTTCTAAGAGCTATGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACATCACTTACTATGCTCCAAACGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGACAATACGAAGACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTTGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTTAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAGGCCGAATCTAATAAAAAAGCTCAAGATAAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.885

100

0.64
  amiA3 Streptococcus thermophilus LMG 18311

63.581

100

0.637
  amiA Streptococcus salivarius strain HSISS4

62.614

100

0.626

Multiple sequence alignment