Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SITYG_RS08085 Genome accession   NZ_AP014880
Coordinates   1588474..1589397 (-) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583474..1594397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08070 (SITYG_15920) - 1585043..1586497 (+) 1455 WP_096363107.1 sucrose-6-phosphate hydrolase -
  SITYG_RS08075 (SITYG_15930) - 1586478..1587443 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  SITYG_RS08080 (SITYG_15940) - 1587529..1588347 (-) 819 WP_096363108.1 Cof-type HAD-IIB family hydrolase -
  SITYG_RS08085 (SITYG_15950) amiF 1588474..1589397 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  SITYG_RS08090 (SITYG_15960) amiE 1589408..1590475 (-) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08095 (SITYG_15970) amiD 1590484..1591410 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  SITYG_RS08100 (SITYG_15980) amiC 1591410..1592906 (-) 1497 WP_096363109.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=67271 SITYG_RS08085 WP_003074407.1 1588474..1589397(-) (amiF) [Streptococcus intermedius strain TYG1620]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=67271 SITYG_RS08085 WP_003074407.1 1588474..1589397(-) (amiF) [Streptococcus intermedius strain TYG1620]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTCCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGTTGTTATCAGAGCATTTAACTCGCTATCCGCATGAATTCTCGGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTTCAAAAAGATCTGGGTTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTGTT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86

Multiple sequence alignment