Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | MUA50_RS05190 | Genome accession | NZ_CP094772 |
| Coordinates | 1022874..1023332 (+) | Length | 152 a.a. |
| NCBI ID | WP_262515785.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain IVB6196 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1014671..1035631 | 1022874..1023332 | within | 0 |
Gene organization within MGE regions
Location: 1014671..1035631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUA50_RS05085 (MUA50_05080) | - | 1014671..1015225 (+) | 555 | WP_000132893.1 | alpha/beta hydrolase | - |
| MUA50_RS05130 (MUA50_05125) | - | 1016502..1017551 (-) | 1050 | WP_262515794.1 | site-specific integrase | - |
| MUA50_RS05135 (MUA50_05130) | - | 1017800..1018720 (-) | 921 | WP_262515793.1 | DUF5067 domain-containing protein | - |
| MUA50_RS05140 (MUA50_05135) | - | 1018739..1019197 (-) | 459 | WP_262515792.1 | ImmA/IrrE family metallo-endopeptidase | - |
| MUA50_RS05145 (MUA50_05140) | - | 1019219..1019545 (-) | 327 | WP_000455972.1 | helix-turn-helix domain-containing protein | - |
| MUA50_RS05150 (MUA50_05145) | - | 1019708..1019917 (+) | 210 | WP_001114715.1 | helix-turn-helix transcriptional regulator | - |
| MUA50_RS05155 (MUA50_05150) | - | 1019956..1020681 (+) | 726 | WP_015978381.1 | phage repressor protein | - |
| MUA50_RS05160 (MUA50_05155) | - | 1020706..1020915 (+) | 210 | WP_000455728.1 | hypothetical protein | - |
| MUA50_RS05165 (MUA50_05160) | - | 1020929..1021099 (+) | 171 | WP_000048123.1 | DUF1270 domain-containing protein | - |
| MUA50_RS05170 (MUA50_05165) | - | 1021104..1021418 (+) | 315 | WP_252592197.1 | XRE family transcriptional regulator | - |
| MUA50_RS05175 (MUA50_05170) | - | 1021482..1021742 (+) | 261 | WP_045178961.1 | DUF1108 family protein | - |
| MUA50_RS05180 (MUA50_05175) | - | 1021757..1022236 (+) | 480 | WP_262540118.1 | siphovirus Gp157 family protein | - |
| MUA50_RS05185 (MUA50_05180) | - | 1022236..1022874 (+) | 639 | WP_262515786.1 | ERF family protein | - |
| MUA50_RS05190 (MUA50_05185) | ssbA | 1022874..1023332 (+) | 459 | WP_262515785.1 | single-stranded DNA-binding protein | Machinery gene |
| MUA50_RS05195 (MUA50_05190) | - | 1023344..1024039 (+) | 696 | WP_262515784.1 | putative HNHc nuclease | - |
| MUA50_RS05200 (MUA50_05195) | - | 1024011..1024832 (+) | 822 | WP_162642963.1 | phage replisome organizer N-terminal domain-containing protein | - |
| MUA50_RS05205 (MUA50_05200) | - | 1024845..1025630 (+) | 786 | WP_262515782.1 | ATP-binding protein | - |
| MUA50_RS05210 (MUA50_05205) | - | 1025627..1025785 (+) | 159 | WP_262515781.1 | hypothetical protein | - |
| MUA50_RS05215 (MUA50_05210) | - | 1025798..1026019 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| MUA50_RS05220 (MUA50_05215) | - | 1026030..1026434 (+) | 405 | WP_031895072.1 | DUF1064 domain-containing protein | - |
| MUA50_RS05225 (MUA50_05220) | - | 1026439..1026624 (+) | 186 | WP_001187244.1 | DUF3113 family protein | - |
| MUA50_RS05230 (MUA50_05225) | - | 1026625..1026984 (+) | 360 | WP_031824891.1 | SA1788 family PVL leukocidin-associated protein | - |
| MUA50_RS05235 (MUA50_05230) | - | 1026988..1027230 (+) | 243 | WP_252570619.1 | phi PVL orf 51-like protein | - |
| MUA50_RS05240 (MUA50_05235) | - | 1027245..1027508 (+) | 264 | WP_262515778.1 | hypothetical protein | - |
| MUA50_RS05245 (MUA50_05240) | - | 1027501..1027749 (+) | 249 | WP_262515777.1 | DUF1024 family protein | - |
| MUA50_RS05250 (MUA50_05245) | - | 1027742..1028251 (+) | 510 | Protein_990 | dUTP diphosphatase | - |
| MUA50_RS05255 (MUA50_05250) | - | 1028288..1028533 (+) | 246 | WP_000120375.1 | hypothetical protein | - |
| MUA50_RS05260 (MUA50_05255) | - | 1028530..1028766 (+) | 237 | WP_262515775.1 | DUF1381 domain-containing protein | - |
| MUA50_RS05265 (MUA50_05260) | - | 1028791..1029027 (+) | 237 | WP_103193023.1 | hypothetical protein | - |
| MUA50_RS05270 (MUA50_05265) | - | 1029020..1029406 (+) | 387 | WP_054189578.1 | hypothetical protein | - |
| MUA50_RS05275 (MUA50_05270) | rinB | 1029403..1029576 (+) | 174 | WP_250406052.1 | transcriptional activator RinB | - |
| MUA50_RS05280 (MUA50_05275) | - | 1029577..1029723 (+) | 147 | WP_262515773.1 | hypothetical protein | - |
| MUA50_RS05285 (MUA50_05280) | - | 1029747..1030169 (+) | 423 | WP_000162699.1 | RinA family phage transcriptional activator | - |
| MUA50_RS05290 (MUA50_05285) | - | 1030356..1030796 (+) | 441 | WP_001003271.1 | terminase small subunit | - |
| MUA50_RS05295 (MUA50_05290) | - | 1030783..1032366 (+) | 1584 | WP_262515770.1 | PBSX family phage terminase large subunit | - |
| MUA50_RS05300 (MUA50_05295) | - | 1032628..1032927 (-) | 300 | WP_000095390.1 | WXG100 family type VII secretion target | - |
| MUA50_RS05305 (MUA50_05300) | - | 1032942..1034513 (-) | 1572 | WP_001791234.1 | hypothetical protein | - |
| MUA50_RS05310 (MUA50_05305) | - | 1034652..1035044 (+) | 393 | WP_086095596.1 | DUF1433 domain-containing protein | - |
| MUA50_RS05315 (MUA50_05310) | - | 1035254..1035631 (+) | 378 | WP_001036447.1 | DUF1433 domain-containing protein | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17239.80 Da Isoelectric Point: 4.7187
>NTDB_id=672244 MUA50_RS05190 WP_262515785.1 1022874..1023332(+) (ssbA) [Staphylococcus aureus strain IVB6196]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
DYENQEGRRVFVTEVVCDSVQFLEPKNNNQQQNDNYQQQNNAYNAPQNRQQSNNPFANANGPIEITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
DYENQEGRRVFVTEVVCDSVQFLEPKNNNQQQNDNYQQQNNAYNAPQNRQQSNNPFANANGPIEITDDDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=672244 MUA50_RS05190 WP_262515785.1 1022874..1023332(+) (ssbA) [Staphylococcus aureus strain IVB6196]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTAGCTGGCGTTGATGGACGTTTACAATCCCGT
GATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAATGACAATTATCAACAACAGAATAATGCATATAACGCACCACAGAATAGACAACAATCAAATA
ACCCGTTCGCTAATGCTAATGGTCCTATAGAAATCACTGACGATGATTTACCTTTCTAG
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTAGCTGGCGTTGATGGACGTTTACAATCCCGT
GATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAATGACAATTATCAACAACAGAATAATGCATATAACGCACCACAGAATAGACAACAATCAAATA
ACCCGTTCGCTAATGCTAATGGTCCTATAGAAATCACTGACGATGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.628 |
100 |
0.697 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.586 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
69.737 |
0.401 |
| ssb | Glaesserella parasuis strain SC1401 |
33.333 |
100 |
0.388 |
| ssb | Neisseria meningitidis MC58 |
32.759 |
100 |
0.375 |
| ssb | Neisseria gonorrhoeae MS11 |
32.759 |
100 |
0.375 |