Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA86_RS09120 Genome accession   NZ_CP094752
Coordinates   1890432..1890890 (-) Length   152 a.a.
NCBI ID   WP_262515785.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6243     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1878133..1918450 1890432..1890890 within 0


Gene organization within MGE regions


Location: 1878133..1918450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA86_RS08995 (MUA86_08985) - 1878133..1878510 (-) 378 WP_001036447.1 DUF1433 domain-containing protein -
  MUA86_RS09000 (MUA86_08990) - 1878720..1879112 (-) 393 WP_086095596.1 DUF1433 domain-containing protein -
  MUA86_RS09005 (MUA86_08995) - 1879251..1880822 (+) 1572 WP_001791234.1 hypothetical protein -
  MUA86_RS09010 (MUA86_09000) - 1880837..1881136 (+) 300 WP_000095390.1 WXG100 family type VII secretion target -
  MUA86_RS09015 (MUA86_09005) - 1881398..1882981 (-) 1584 WP_262515770.1 PBSX family phage terminase large subunit -
  MUA86_RS09020 (MUA86_09010) - 1882968..1883408 (-) 441 WP_001003271.1 terminase small subunit -
  MUA86_RS09025 (MUA86_09015) - 1883595..1884017 (-) 423 WP_000162699.1 RinA family phage transcriptional activator -
  MUA86_RS09030 (MUA86_09020) - 1884041..1884187 (-) 147 WP_262515773.1 hypothetical protein -
  MUA86_RS09035 (MUA86_09025) rinB 1884188..1884361 (-) 174 WP_250406052.1 transcriptional activator RinB -
  MUA86_RS09040 (MUA86_09030) - 1884358..1884744 (-) 387 WP_054189578.1 hypothetical protein -
  MUA86_RS09045 (MUA86_09035) - 1884737..1884973 (-) 237 WP_103193023.1 hypothetical protein -
  MUA86_RS09050 (MUA86_09040) - 1884998..1885234 (-) 237 WP_262515775.1 DUF1381 domain-containing protein -
  MUA86_RS09055 (MUA86_09045) - 1885231..1885476 (-) 246 WP_000120375.1 hypothetical protein -
  MUA86_RS09060 (MUA86_09050) - 1885513..1886022 (-) 510 Protein_1781 dUTP diphosphatase -
  MUA86_RS09065 (MUA86_09055) - 1886015..1886263 (-) 249 WP_262515777.1 DUF1024 family protein -
  MUA86_RS09070 (MUA86_09060) - 1886256..1886519 (-) 264 WP_262515778.1 hypothetical protein -
  MUA86_RS09075 (MUA86_09065) - 1886534..1886776 (-) 243 WP_252570619.1 phi PVL orf 51-like protein -
  MUA86_RS09080 (MUA86_09070) - 1886780..1887139 (-) 360 WP_031824891.1 SA1788 family PVL leukocidin-associated protein -
  MUA86_RS09085 (MUA86_09075) - 1887140..1887325 (-) 186 WP_001187244.1 DUF3113 family protein -
  MUA86_RS09090 (MUA86_09080) - 1887330..1887734 (-) 405 WP_031895072.1 DUF1064 domain-containing protein -
  MUA86_RS09095 (MUA86_09085) - 1887745..1887966 (-) 222 WP_001123688.1 DUF3269 family protein -
  MUA86_RS09100 (MUA86_09090) - 1887979..1888137 (-) 159 WP_262515781.1 hypothetical protein -
  MUA86_RS09105 (MUA86_09095) - 1888134..1888919 (-) 786 WP_262515782.1 ATP-binding protein -
  MUA86_RS09110 (MUA86_09100) - 1888932..1889753 (-) 822 WP_162642963.1 phage replisome organizer N-terminal domain-containing protein -
  MUA86_RS09115 (MUA86_09105) - 1889725..1890420 (-) 696 WP_262515784.1 putative HNHc nuclease -
  MUA86_RS09120 (MUA86_09110) ssbA 1890432..1890890 (-) 459 WP_262515785.1 single-stranded DNA-binding protein Machinery gene
  MUA86_RS09125 (MUA86_09115) - 1890890..1891528 (-) 639 WP_262515786.1 ERF family protein -
  MUA86_RS09130 (MUA86_09120) - 1891528..1892007 (-) 480 WP_262515787.1 siphovirus Gp157 family protein -
  MUA86_RS09135 (MUA86_09125) - 1892022..1892282 (-) 261 WP_045178961.1 DUF1108 family protein -
  MUA86_RS09140 (MUA86_09130) - 1892346..1892660 (-) 315 WP_252592197.1 XRE family transcriptional regulator -
  MUA86_RS09145 (MUA86_09135) - 1892665..1892835 (-) 171 WP_000048123.1 DUF1270 domain-containing protein -
  MUA86_RS09150 (MUA86_09140) - 1892849..1893058 (-) 210 WP_000455728.1 hypothetical protein -
  MUA86_RS09155 (MUA86_09145) - 1893083..1893808 (-) 726 WP_015978381.1 phage repressor protein -
  MUA86_RS09160 (MUA86_09150) - 1893847..1894056 (-) 210 WP_001114715.1 helix-turn-helix transcriptional regulator -
  MUA86_RS09165 (MUA86_09155) - 1894219..1894545 (+) 327 WP_000455972.1 helix-turn-helix domain-containing protein -
  MUA86_RS09170 (MUA86_09160) - 1894567..1895025 (+) 459 WP_262515792.1 ImmA/IrrE family metallo-endopeptidase -
  MUA86_RS09175 (MUA86_09165) - 1895044..1895964 (+) 921 WP_262515793.1 DUF5067 domain-containing protein -
  MUA86_RS09180 (MUA86_09170) - 1896212..1897261 (+) 1050 WP_262515794.1 site-specific integrase -
  MUA86_RS09225 (MUA86_09215) - 1898538..1899092 (-) 555 WP_000132893.1 alpha/beta hydrolase -
  MUA86_RS09230 (MUA86_09220) hemY 1899412..1900812 (-) 1401 WP_000167535.1 protoporphyrinogen oxidase -
  MUA86_RS09235 (MUA86_09225) hemH 1900836..1901759 (-) 924 WP_000162875.1 ferrochelatase -
  MUA86_RS09240 (MUA86_09230) hemE 1901817..1902854 (-) 1038 WP_000233541.1 uroporphyrinogen decarboxylase -
  MUA86_RS09245 (MUA86_09235) - 1902844..1902930 (-) 87 WP_031875110.1 hypothetical protein -
  MUA86_RS09250 (MUA86_09240) traP 1903116..1903619 (+) 504 WP_000737983.1 signal transduction protein TRAP -
  MUA86_RS09255 (MUA86_09245) ecsB 1903743..1904966 (-) 1224 WP_001245764.1 ABC transporter permease EcsB -
  MUA86_RS09260 (MUA86_09250) ecsA 1904959..1905699 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA -
  MUA86_RS09265 (MUA86_09255) - 1905833..1906255 (+) 423 WP_000004981.1 HIT family protein -
  MUA86_RS09270 (MUA86_09260) - 1906397..1906762 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  MUA86_RS09275 (MUA86_09265) - 1907495..1908052 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  MUA86_RS09280 (MUA86_09270) - 1908257..1909219 (+) 963 WP_000782130.1 foldase protein PrsA -
  MUA86_RS09285 (MUA86_09275) yhaM 1909340..1910281 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  MUA86_RS09290 (MUA86_09280) - 1910278..1913214 (-) 2937 WP_000584639.1 ATP-binding protein -
  MUA86_RS09295 (MUA86_09285) - 1913204..1914400 (-) 1197 WP_000238227.1 exonuclease SbcCD subunit D -
  MUA86_RS14245 - 1914697..1914804 (-) 108 WP_031788451.1 hypothetical protein -
  MUA86_RS09300 (MUA86_09290) - 1915289..1915633 (-) 345 WP_000290301.1 YlbF/YmcA family competence regulator -
  MUA86_RS09305 (MUA86_09295) - 1915702..1916826 (-) 1125 WP_000992513.1 DUF445 domain-containing protein -
  MUA86_RS09310 (MUA86_09300) - 1917005..1917469 (-) 465 WP_000375864.1 helix-turn-helix transcriptional regulator -
  MUA86_RS09315 (MUA86_09305) - 1917827..1918450 (-) 624 WP_001045133.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17239.80 Da        Isoelectric Point: 4.7187

>NTDB_id=671969 MUA86_RS09120 WP_262515785.1 1890432..1890890(-) (ssbA) [Staphylococcus aureus strain IVB6243]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
DYENQEGRRVFVTEVVCDSVQFLEPKNNNQQQNDNYQQQNNAYNAPQNRQQSNNPFANANGPIEITDDDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=671969 MUA86_RS09120 WP_262515785.1 1890432..1890890(-) (ssbA) [Staphylococcus aureus strain IVB6243]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTAGCTGGCGTTGATGGACGTTTACAATCCCGT
GATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAATGACAATTATCAACAACAGAATAATGCATATAACGCACCACAGAATAGACAACAATCAAATA
ACCCGTTCGCTAATGCTAATGGTCCTATAGAAATCACTGACGATGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.628

100

0.697
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

69.737

0.401
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.388
  ssb Neisseria meningitidis MC58

32.759

100

0.375
  ssb Neisseria gonorrhoeae MS11

32.759

100

0.375