Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA88_RS05760 Genome accession   NZ_CP094718
Coordinates   1179166..1179486 (+) Length   106 a.a.
NCBI ID   WP_262603246.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6240     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174166..1184486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA88_RS05730 (MUA88_05720) - 1174939..1175142 (+) 204 WP_262603240.1 YqgQ family protein -
  MUA88_RS05735 (MUA88_05725) - 1175139..1176119 (+) 981 WP_262605198.1 ROK family glucokinase -
  MUA88_RS05740 (MUA88_05730) - 1176126..1176437 (+) 312 WP_262603242.1 MTH1187 family thiamine-binding protein -
  MUA88_RS05745 (MUA88_05735) - 1176466..1177089 (+) 624 WP_262603243.1 MBL fold metallo-hydrolase -
  MUA88_RS05750 (MUA88_05740) comGA 1177145..1178119 (+) 975 Protein_1123 competence type IV pilus ATPase ComGA -
  MUA88_RS05755 (MUA88_05745) comGB 1178088..1179155 (+) 1068 WP_262603245.1 competence type IV pilus assembly protein ComGB -
  MUA88_RS05760 (MUA88_05750) comGC 1179166..1179486 (+) 321 WP_262603246.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA88_RS05765 (MUA88_05755) comGD 1179464..1179910 (+) 447 WP_262605199.1 competence type IV pilus minor pilin ComGD -
  MUA88_RS05770 - 1179903..1180196 (+) 294 WP_262605200.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MUA88_RS05775 (MUA88_05760) - 1180189..1180365 (+) 177 WP_262605201.1 hypothetical protein -
  MUA88_RS05780 (MUA88_05765) - 1180752..1181276 (+) 525 WP_262605202.1 shikimate kinase -
  MUA88_RS05785 (MUA88_05770) gcvT 1181437..1182528 (+) 1092 WP_262603250.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA88_RS05790 (MUA88_05775) gcvPA 1182541..1183890 (+) 1350 WP_262605203.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11956.19 Da        Isoelectric Point: 9.9174

>NTDB_id=671136 MUA88_RS05760 WP_262603246.1 1179166..1179486(+) (comGC) [Staphylococcus sp. IVB6240]
MKQLLSKLRQTKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCKAQMRLVDSQIEAYTLKFNQKPNSIDDLIRE
GYLKDVQKTCKSGETIRIQNGEAVAS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=671136 MUA88_RS05760 WP_262603246.1 1179166..1179486(+) (comGC) [Staphylococcus sp. IVB6240]
ATGAAACAATTACTATCAAAATTGCGACAAACGAAAGGATTCACACTCATTGAGATGCTACTCGTTTTACTGATTATAAG
TGTACTTCTCATTTTAATTATCCCAAATATCGCAAAACAATCTGATCATATTCAAAAAACAGGATGCAAAGCACAAATGC
GCCTTGTCGACAGTCAAATAGAAGCCTATACTTTAAAATTTAATCAAAAACCAAATTCGATAGATGATTTAATTCGGGAA
GGGTATTTAAAAGATGTTCAAAAGACTTGTAAATCTGGGGAAACAATTCGTATTCAAAATGGCGAGGCCGTTGCATCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

71.717

93.396

0.67
  comGC Staphylococcus aureus N315

71.717

93.396

0.67
  comGC/cglC Streptococcus mitis SK321

39.048

99.057

0.387
  comGC Bacillus subtilis subsp. subtilis str. 168

45.055

85.849

0.387
  comGC/cglC Streptococcus pneumoniae D39

38.095

99.057

0.377
  comGC/cglC Streptococcus pneumoniae R6

38.095

99.057

0.377
  comGC/cglC Streptococcus pneumoniae TIGR4

38.095

99.057

0.377
  comGC/cglC Streptococcus pneumoniae Rx1

38.095

99.057

0.377
  comYC Streptococcus suis isolate S10

44.828

82.075

0.368