Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA54_RS06715 Genome accession   NZ_CP094704
Coordinates   1448431..1448760 (+) Length   109 a.a.
NCBI ID   WP_002481038.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6207     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443431..1453760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA54_RS06690 (MUA54_06675) - 1443582..1443911 (+) 330 WP_262553508.1 MTH1187 family thiamine-binding protein -
  MUA54_RS06695 (MUA54_06680) - 1443911..1444534 (+) 624 WP_262553510.1 MBL fold metallo-hydrolase -
  MUA54_RS06700 (MUA54_06685) - 1444713..1446410 (+) 1698 WP_262553512.1 IS1182 family transposase -
  MUA54_RS06705 (MUA54_06690) comGA 1446394..1447368 (+) 975 WP_002481040.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA54_RS06710 (MUA54_06695) comGB 1447340..1448413 (+) 1074 WP_262553514.1 competence type IV pilus assembly protein ComGB -
  MUA54_RS06715 (MUA54_06700) comGC 1448431..1448760 (+) 330 WP_002481038.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA54_RS06720 (MUA54_06705) comGD 1448763..1449188 (+) 426 WP_002481037.1 competence type IV pilus minor pilin ComGD -
  MUA54_RS06725 (MUA54_06710) comGF 1449407..1449901 (+) 495 WP_262553516.1 competence type IV pilus minor pilin ComGF -
  MUA54_RS06730 (MUA54_06715) - 1450066..1450605 (+) 540 WP_002481034.1 shikimate kinase -
  MUA54_RS06735 (MUA54_06720) gcvT 1450784..1451878 (+) 1095 WP_023015155.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA54_RS06740 (MUA54_06725) gcvPA 1451900..1453249 (+) 1350 WP_057510473.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12084.23 Da        Isoelectric Point: 9.6828

>NTDB_id=670824 MUA54_RS06715 WP_002481038.1 1448431..1448760(+) (comGC) [Staphylococcus simulans strain IVB6207]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=670824 MUA54_RS06715 WP_002481038.1 1448431..1448760(+) (comGC) [Staphylococcus simulans strain IVB6207]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGTGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTAAATAAAAATAGAGCGCCTTCTTCAATCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCTGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

72.632

87.156

0.633
  comGC Staphylococcus aureus MW2

72.632

87.156

0.633
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

96.33

0.404
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

88.073

0.376
  comGC/cglC Streptococcus mitis SK321

46.067

81.651

0.376
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

81.651

0.376
  comGC/cglC Streptococcus pneumoniae D39

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae R6

44.944

81.651

0.367