Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTO98_RS33925 Genome accession   NZ_CP094527
Coordinates   8069855..8070187 (+) Length   110 a.a.
NCBI ID   WP_243484227.1    Uniprot ID   -
Organism   Mucilaginibacter sp. SMC90     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 8038208..8077400 8069855..8070187 within 0


Gene organization within MGE regions


Location: 8038208..8077400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO98_RS34355 - 8038679..8038801 (-) 123 WP_256464348.1 hypothetical protein -
  MTO98_RS33750 (MTO98_33750) - 8039054..8039275 (-) 222 WP_243484155.1 hypothetical protein -
  MTO98_RS33755 (MTO98_33755) - 8039474..8039767 (-) 294 WP_243484157.1 hypothetical protein -
  MTO98_RS33760 (MTO98_33760) - 8039824..8040264 (-) 441 WP_243484158.1 Hsp20/alpha crystallin family protein -
  MTO98_RS33765 (MTO98_33765) - 8040621..8041097 (+) 477 WP_243484160.1 MgtC/SapB family protein -
  MTO98_RS33770 (MTO98_33770) - 8041123..8042013 (+) 891 WP_243484162.1 bestrophin family protein -
  MTO98_RS33775 (MTO98_33775) - 8042825..8044252 (-) 1428 WP_243484163.1 TolC family protein -
  MTO98_RS33780 (MTO98_33780) - 8044264..8047473 (-) 3210 WP_243484165.1 efflux RND transporter permease subunit -
  MTO98_RS33785 (MTO98_33785) - 8047593..8048732 (-) 1140 WP_243484167.1 efflux RND transporter periplasmic adaptor subunit -
  MTO98_RS33790 (MTO98_33790) - 8048825..8049424 (-) 600 WP_243484169.1 TetR/AcrR family transcriptional regulator -
  MTO98_RS33795 (MTO98_33795) - 8049741..8050946 (-) 1206 WP_243484171.1 MFS transporter -
  MTO98_RS33800 (MTO98_33800) - 8051038..8051892 (-) 855 WP_243484173.1 AraC family transcriptional regulator -
  MTO98_RS33805 (MTO98_33805) - 8052614..8053036 (+) 423 WP_243484175.1 helix-turn-helix transcriptional regulator -
  MTO98_RS33810 (MTO98_33810) - 8053624..8054226 (-) 603 WP_243484177.1 hypothetical protein -
  MTO98_RS33815 (MTO98_33815) - 8054265..8055245 (-) 981 WP_243484179.1 relaxase/mobilization nuclease domain-containing protein -
  MTO98_RS33820 (MTO98_33820) mobC 8055235..8055612 (-) 378 WP_243484182.1 plasmid mobilization relaxosome protein MobC -
  MTO98_RS33825 (MTO98_33825) - 8055819..8056736 (-) 918 WP_243484184.1 toprim domain-containing protein -
  MTO98_RS33830 (MTO98_33830) - 8056989..8057183 (-) 195 WP_243484185.1 hypothetical protein -
  MTO98_RS33835 (MTO98_33835) - 8057171..8058214 (-) 1044 WP_243484187.1 primase-helicase family protein -
  MTO98_RS33840 (MTO98_33840) - 8058223..8058510 (-) 288 WP_243484190.1 helix-turn-helix domain-containing protein -
  MTO98_RS33845 (MTO98_33845) - 8058582..8059736 (-) 1155 WP_243484193.1 hypothetical protein -
  MTO98_RS33850 (MTO98_33850) - 8060224..8060961 (+) 738 WP_243484195.1 hypothetical protein -
  MTO98_RS33855 (MTO98_33855) - 8061028..8061819 (-) 792 WP_243484197.1 PKD domain-containing protein -
  MTO98_RS33860 (MTO98_33860) - 8061998..8062234 (-) 237 WP_243484199.1 helix-turn-helix domain-containing protein -
  MTO98_RS33865 (MTO98_33865) - 8062398..8062547 (-) 150 WP_243484202.1 hypothetical protein -
  MTO98_RS33870 (MTO98_33870) - 8062855..8063121 (+) 267 WP_243484204.1 helix-turn-helix transcriptional regulator -
  MTO98_RS33875 (MTO98_33875) - 8063605..8064315 (-) 711 WP_243484205.1 PAS domain-containing protein -
  MTO98_RS33880 (MTO98_33880) - 8064691..8065548 (+) 858 WP_243484207.1 phosphatase PAP2 family protein -
  MTO98_RS33885 (MTO98_33885) - 8065750..8065983 (-) 234 WP_243484209.1 helix-turn-helix transcriptional regulator -
  MTO98_RS33890 (MTO98_33890) - 8066371..8066643 (-) 273 WP_243484211.1 hypothetical protein -
  MTO98_RS33895 (MTO98_33895) - 8066706..8066972 (-) 267 WP_243484213.1 helix-turn-helix domain-containing protein -
  MTO98_RS33900 (MTO98_33900) - 8067412..8067675 (-) 264 WP_243484215.1 hypothetical protein -
  MTO98_RS33905 (MTO98_33905) - 8067889..8068158 (+) 270 WP_243484218.1 hypothetical protein -
  MTO98_RS33910 (MTO98_33910) - 8068179..8068448 (-) 270 WP_243484220.1 helix-turn-helix domain-containing protein -
  MTO98_RS33915 (MTO98_33915) - 8068950..8069225 (-) 276 WP_243484222.1 hypothetical protein -
  MTO98_RS33920 (MTO98_33920) - 8069313..8069684 (+) 372 WP_243484225.1 PleD family two-component system response regulator -
  MTO98_RS33925 (MTO98_33925) ssb 8069855..8070187 (+) 333 WP_243484227.1 single-stranded DNA-binding protein Machinery gene
  MTO98_RS33930 (MTO98_33930) - 8070436..8071458 (-) 1023 WP_243484229.1 ABC transporter permease -
  MTO98_RS33935 (MTO98_33935) - 8071385..8072386 (-) 1002 WP_243484231.1 ABC transporter ATP-binding protein -
  MTO98_RS33940 (MTO98_33940) - 8072373..8073227 (-) 855 WP_243484234.1 NEW3 domain-containing protein -
  MTO98_RS33945 (MTO98_33945) - 8073407..8074081 (+) 675 WP_243484236.1 PAS domain-containing protein -
  MTO98_RS33950 (MTO98_33950) - 8074535..8075905 (-) 1371 WP_243484238.1 RNA-binding domain-containing protein -
  MTO98_RS33955 (MTO98_33955) - 8075995..8076435 (-) 441 WP_243484240.1 tyrosine-type recombinase/integrase -
  MTO98_RS33960 (MTO98_33960) - 8076413..8077141 (-) 729 WP_243484242.1 phage integrase SAM-like domain and Arm DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12258.07 Da        Isoelectric Point: 9.5500

>NTDB_id=670017 MTO98_RS33925 WP_243484227.1 8069855..8070187(+) (ssb) [Mucilaginibacter sp. SMC90]
MAGINKVFLAGHLGKDPDLRYLDNGVAVSSFPLATSEITGRGEQQKAVTEWHNIVMWRSLAERSVQLKKGQLVYIEGKIR
TRNIIDRTGLKKYVTEISADHFEVLGGQCS

Nucleotide


Download         Length: 333 bp        

>NTDB_id=670017 MTO98_RS33925 WP_243484227.1 8069855..8070187(+) (ssb) [Mucilaginibacter sp. SMC90]
ATGGCTGGTATTAATAAGGTGTTTTTAGCCGGTCATTTAGGCAAAGACCCGGATTTACGTTATCTCGATAATGGCGTCGC
CGTCTCATCCTTCCCACTTGCAACATCGGAAATAACCGGCAGAGGGGAGCAGCAAAAAGCTGTCACCGAATGGCATAACA
TAGTCATGTGGCGATCTTTGGCGGAAAGGTCAGTACAGCTAAAAAAAGGTCAACTTGTTTATATCGAAGGGAAGATACGT
ACACGAAATATCATAGATCGAACTGGCCTTAAGAAATACGTAACGGAAATATCGGCTGACCACTTTGAAGTACTCGGCGG
ACAATGTTCCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.69

100

0.482
  ssb Neisseria meningitidis MC58

47.664

97.273

0.464
  ssb Neisseria gonorrhoeae MS11

47.664

97.273

0.464
  ssb Vibrio cholerae strain A1552

41.739

100

0.436
  ssbA Bacillus subtilis subsp. subtilis str. 168

39.423

94.545

0.373
  ssb Latilactobacillus sakei subsp. sakei 23K

39.423

94.545

0.373