Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG397_RS37735 Genome accession   NZ_CP108980
Coordinates   8820745..8821398 (-) Length   217 a.a.
NCBI ID   WP_328557345.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00728     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8815745..8826398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG397_RS37715 (OG397_37690) - 8816700..8817995 (-) 1296 WP_405917951.1 streptophobe family protein -
  OG397_RS37720 (OG397_37695) - 8818158..8819465 (+) 1308 WP_328557342.1 DUF6777 domain-containing protein -
  OG397_RS37725 (OG397_37700) - 8819584..8820114 (+) 531 WP_405917952.1 helix-turn-helix domain-containing protein -
  OG397_RS37730 (OG397_37705) clpP 8820141..8820743 (-) 603 WP_328557344.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG397_RS37735 (OG397_37710) clpP 8820745..8821398 (-) 654 WP_328557345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG397_RS37740 (OG397_37715) - 8821672..8822871 (-) 1200 WP_405917953.1 epoxide hydrolase family protein -
  OG397_RS37745 (OG397_37720) - 8823096..8823578 (+) 483 WP_405917954.1 VOC family protein -
  OG397_RS37750 (OG397_37725) - 8823843..8824604 (-) 762 Protein_7451 PP2C family protein-serine/threonine phosphatase -
  OG397_RS37755 (OG397_37730) - 8824732..8825529 (+) 798 WP_328557350.1 VOC family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23695.75 Da        Isoelectric Point: 5.6983

>NTDB_id=668407 OG397_RS37735 WP_328557345.1 8820745..8821398(-) (clpP) [Streptomyces sp. NBC_00728]
MTPLITGRYPARAARAEEGDTPATRFDDHLAAQLLAQRIVFLGTQVDEVSANRVCAQLLLLSAEDARTDISLYINSPGGS
VTAGLAIYDTMRLIPNDVSTLAMGFAASMGQFLLSVGTRGKRFALPNARIMMHQPSAGIGGTTADIEIQAQNHEFTKRAI
ERITAEHTGQTEETVSRDGDRDRWFTAEQAKEYGMVDRVVESLDDVRPAASRRRMGL

Nucleotide


Download         Length: 654 bp        

>NTDB_id=668407 OG397_RS37735 WP_328557345.1 8820745..8821398(-) (clpP) [Streptomyces sp. NBC_00728]
ATGACTCCCCTCATCACCGGCCGGTATCCGGCCCGCGCGGCGCGGGCCGAGGAGGGCGACACCCCCGCGACCCGGTTCGA
CGACCATCTGGCCGCGCAGTTGCTCGCCCAGCGGATCGTCTTCCTCGGCACCCAGGTCGACGAGGTCTCCGCGAACCGGG
TCTGCGCCCAACTGCTCCTGCTGTCCGCCGAGGACGCGCGCACCGACATCAGCCTGTACATCAACAGTCCGGGCGGATCG
GTGACCGCGGGACTCGCCATCTACGACACCATGCGGCTGATCCCCAACGACGTGTCCACACTCGCGATGGGATTCGCGGC
GAGCATGGGGCAGTTCCTGCTCAGCGTGGGGACGCGCGGCAAGCGGTTCGCGCTGCCGAACGCGCGGATCATGATGCACC
AGCCCTCCGCGGGCATCGGCGGCACCACCGCCGACATCGAGATCCAGGCCCAGAACCACGAGTTCACCAAGCGGGCCATC
GAACGGATCACCGCGGAGCACACCGGCCAGACCGAGGAGACGGTCTCCAGGGACGGCGACCGCGACCGCTGGTTCACGGC
CGAACAGGCCAAGGAATACGGCATGGTGGACCGGGTCGTGGAGTCGCTCGACGATGTCCGCCCGGCCGCGTCACGGCGAC
GGATGGGGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.315

82.028

0.396
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.419

79.263

0.392
  clpP Streptococcus pneumoniae D39

47.399

79.724

0.378
  clpP Streptococcus pneumoniae R6

47.399

79.724

0.378
  clpP Streptococcus pneumoniae Rx1

47.399

79.724

0.378
  clpP Streptococcus pneumoniae TIGR4

47.399

79.724

0.378
  clpP Streptococcus pyogenes JRS4

46.286

80.645

0.373
  clpP Streptococcus pyogenes MGAS315

46.286

80.645

0.373
  clpP Streptococcus thermophilus LMD-9

46.243

79.724

0.369
  clpP Streptococcus thermophilus LMG 18311

46.243

79.724

0.369
  clpP Lactococcus lactis subsp. cremoris KW2

45.143

80.645

0.364

Multiple sequence alignment