Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG397_RS37730 Genome accession   NZ_CP108980
Coordinates   8820141..8820743 (-) Length   200 a.a.
NCBI ID   WP_328557344.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00728     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 8815141..8825743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG397_RS37710 (OG397_37685) - 8815627..8816625 (+) 999 WP_405917950.1 serine/threonine-protein kinase -
  OG397_RS37715 (OG397_37690) - 8816700..8817995 (-) 1296 WP_405917951.1 streptophobe family protein -
  OG397_RS37720 (OG397_37695) - 8818158..8819465 (+) 1308 WP_328557342.1 DUF6777 domain-containing protein -
  OG397_RS37725 (OG397_37700) - 8819584..8820114 (+) 531 WP_405917952.1 helix-turn-helix domain-containing protein -
  OG397_RS37730 (OG397_37705) clpP 8820141..8820743 (-) 603 WP_328557344.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG397_RS37735 (OG397_37710) clpP 8820745..8821398 (-) 654 WP_328557345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG397_RS37740 (OG397_37715) - 8821672..8822871 (-) 1200 WP_405917953.1 epoxide hydrolase family protein -
  OG397_RS37745 (OG397_37720) - 8823096..8823578 (+) 483 WP_405917954.1 VOC family protein -
  OG397_RS37750 (OG397_37725) - 8823843..8824604 (-) 762 Protein_7451 PP2C family protein-serine/threonine phosphatase -
  OG397_RS37755 (OG397_37730) - 8824732..8825529 (+) 798 WP_328557350.1 VOC family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21662.59 Da        Isoelectric Point: 5.0288

>NTDB_id=668406 OG397_RS37730 WP_328557344.1 8820141..8820743(-) (clpP) [Streptomyces sp. NBC_00728]
MGTYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSSPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGHQGTVSDLSLQAKEMLRIRSQVEEVLSRH
TGHDIATLRADMDRDKIFTAREAVSYGLADEILSRRLAVP

Nucleotide


Download         Length: 603 bp        

>NTDB_id=668406 OG397_RS37730 WP_328557344.1 8820141..8820743(-) (clpP) [Streptomyces sp. NBC_00728]
ATGGGTACGTACACGATTCCGAACGTCGTCGAGCGGACCCCGCAGGGCGAGCGGTCGTACGACGTCTTCAGCCGGCTCCT
CTCCGAGCGGATCATCTTTCTCGGCACGGAGATCGACGACGGCGTCGCCAACGTCGTCATCGCGCAACTCCTCCACCTGG
AGTCGTCGAGCCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGGGGCTCGTTCACTTCGCTGATGGCGATCTAC
GACACGATGACCTTCGTGCAGGCGCCGATCTCCACGTTCTGCGTCGGGCAGGCCGCCTCCACGGCCGCGGTGCTGCTTGC
CGGGGGCGATCCCGGACGGCGGTTCGTCCTGGAGCACGCGCGCGTGCTGCTCGGCCAGCCCGCCAGCGGCGGACATCAGG
GCACGGTGTCCGACCTCAGCCTCCAGGCCAAGGAGATGCTGCGTATCCGCTCGCAGGTCGAGGAGGTCCTCTCCCGGCAC
ACCGGCCACGACATCGCCACCCTGCGCGCGGACATGGACCGCGACAAGATCTTCACGGCGCGGGAGGCGGTGTCGTACGG
GCTCGCGGACGAGATCCTGAGCCGACGGCTGGCCGTGCCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.206

94.5

0.465
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.263

95

0.43
  clpP Streptococcus mutans UA159

41.27

94.5

0.39
  clpP Streptococcus pneumoniae R6

39.583

96

0.38
  clpP Streptococcus pneumoniae TIGR4

39.583

96

0.38
  clpP Streptococcus pyogenes MGAS315

39.583

96

0.38
  clpP Streptococcus pneumoniae Rx1

39.583

96

0.38
  clpP Streptococcus pneumoniae D39

39.583

96

0.38
  clpP Streptococcus pyogenes JRS4

39.583

96

0.38
  clpP Streptococcus thermophilus LMD-9

38.542

96

0.37
  clpP Streptococcus thermophilus LMG 18311

38.542

96

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

38.144

97

0.37

Multiple sequence alignment