Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MON40_RS13060 Genome accession   NZ_CP094241
Coordinates   2731998..2732288 (-) Length   96 a.a.
NCBI ID   WP_009313167.1    Uniprot ID   A0A9X5U676
Organism   Neisseria macacae ATCC 33926     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2731289..2731729 2731998..2732288 flank 269


Gene organization within MGE regions


Location: 2731289..2732288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS13055 (MON40_13055) - 2731325..2731729 (-) 405 Protein_2535 helix-turn-helix domain-containing protein -
  MON40_RS13060 (MON40_13060) comE 2731998..2732288 (-) 291 WP_009313167.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 9919.59 Da        Isoelectric Point: 10.5400

>NTDB_id=668323 MON40_RS13060 WP_009313167.1 2731998..2732288(-) (comE) [Neisseria macacae ATCC 33926]
MKKFLFAALSLLTASLSLAAVNINTASPSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VAPAAQNKAATPAAKK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=668323 MON40_RS13060 WP_009313167.1 2731998..2732288(-) (comE) [Neisseria macacae ATCC 33926]
ATGAAAAAATTCCTCTTTGCCGCCCTCTCCCTGCTGACCGCTTCGCTGTCGCTGGCCGCCGTCAACATCAATACCGCTTC
CCCGTCCGAGTTGGAAGCCCTGCCCGGTATCGGCCCTGCCAAAGCCAAAGCCATCGTGGACTACCGTCAACAACATGGTG
CCTTCAAATCGGTCGAGGAGTTGAAAAACGTCAAAGGTATCGGTGAGGGCATCTTCTCCAAACTGAAGGCGGAAGCAACC
GTCGCCCCGGCCGCTCAAAACAAAGCCGCCACCCCCGCCGCTAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

84.375

0.448
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

89.583

0.406
  comEA Staphylococcus aureus N315

57.377

63.542

0.365
  comEA Staphylococcus aureus MW2

57.377

63.542

0.365

Multiple sequence alignment