Detailed information NTG0668296

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OIC96_RS28020
• Genome accession: NZ_CP108938
• Coordinates: 6277526..6278524 (+)
• Length: 332 a.a.
• NCBI ID: WP_330305191.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00775
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6272526..6283524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIC96_RS27995 (OIC96_28030)	-	6272786..6273430 (+)	645	WP_330305196.1	TetR/AcrR family transcriptional regulator	-
OIC96_RS28000 (OIC96_28035)	-	6273574..6275118 (+)	1545	WP_330305195.1	MFS transporter	-
OIC96_RS28005 (OIC96_28040)	-	6275340..6275843 (-)	504	WP_330305194.1	MarR family transcriptional regulator	-
OIC96_RS28010 (OIC96_28045)	-	6275985..6276791 (+)	807	WP_330305193.1	class III extradiol ring-cleavage dioxygenase	-
OIC96_RS28015 (OIC96_28050)	-	6276815..6277351 (-)	537	WP_330305192.1	N-acetyltransferase family protein	-
OIC96_RS28020 (OIC96_28055)	rpoS	6277526..6278524 (+)	999	WP_330305191.1	sigma-70 family RNA polymerase sigma factor	Regulator
OIC96_RS28025 (OIC96_28060)	-	6279235..6279864 (+)	630	WP_330305190.1	TetR family transcriptional regulator	-
OIC96_RS28030 (OIC96_28065)	-	6279872..6280894 (-)	1023	WP_330305189.1	YafY family protein	-
OIC96_RS28035 (OIC96_28070)	-	6280957..6282495 (+)	1539	WP_330305188.1	MFS transporter	-
OIC96_RS28040 (OIC96_28075)	-	6282679..6283440 (+)	762	WP_327429406.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37122.88 Da
• Isoelectric Point: 5.0475

>NTDB_id=668296 OIC96_RS28020 WP_330305191.1 6277526..6278524(+) (rpoS) [Streptomyces sp. NBC_00775]
MATRAVARRKSATGETSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEATAGAD
ASREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide

• Length: 999 bp

>NTDB_id=668296 OIC96_RS28020 WP_330305191.1 6277526..6278524(+) (rpoS) [Streptomyces sp. NBC_00775]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCAGCGACGCGGCACGCAGTGTTCGCGTCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGGCGAGGCTACGGCCGGAGCGGAC
GCGTCCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGCGAGCGAGCGAAGGACATCTTCATCCGCTCGAACCTCCGGCT
GGTCGTCGCTGTCGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCGCGT
ACAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAACTCGACTCGACGCCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGTGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCCCCCGAGCAGTCGGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGATGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTTCTCGAACTGAAG
AAGCTGGCCCGTGACACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364