Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MON40_RS01655 Genome accession   NZ_CP094241
Coordinates   340873..342093 (+) Length   406 a.a.
NCBI ID   WP_003779763.1    Uniprot ID   A0AA36UI32
Organism   Neisseria macacae ATCC 33926     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 335873..347093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS01640 (MON40_01640) - 336499..337092 (+) 594 WP_003779762.1 DUF4390 domain-containing protein -
  MON40_RS01645 (MON40_01645) - 337096..339219 (+) 2124 WP_003760528.1 PAS domain-containing sensor histidine kinase -
  MON40_RS01650 (MON40_01650) - 339212..340495 (+) 1284 WP_003763191.1 sigma-54 dependent transcriptional regulator -
  MON40_RS01655 (MON40_01655) dprA 340873..342093 (+) 1221 WP_003779763.1 DNA-processing protein DprA Machinery gene
  MON40_RS01660 (MON40_01660) - 342120..342575 (+) 456 WP_003742632.1 DUF494 family protein -
  MON40_RS01665 (MON40_01665) topA 342660..344966 (+) 2307 WP_009312695.1 type I DNA topoisomerase -
  MON40_RS01670 (MON40_01670) - 345042..345263 (-) 222 WP_003760517.1 hypothetical protein -
  MON40_RS01675 (MON40_01675) rsmD 345534..346100 (+) 567 WP_003779766.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MON40_RS01680 (MON40_01680) - 346222..346473 (+) 252 WP_003679513.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43783.14 Da        Isoelectric Point: 6.7683

>NTDB_id=668293 MON40_RS01655 WP_003779763.1 340873..342093(+) (dprA) [Neisseria macacae ATCC 33926]
MTENDRLAWLQLAFTPYVGAEGFLLLLQRFGSAKAALDAPVEQIATIVRHKQAAESWRNGEKRALAQKAAEAALQWEKQD
GCRLLLLQDDDFPEMLTQGITAPPVLFLRGNVQLLHKPSAAIVGSRHATPQAMRIAKDFGRALSEKDIPVVSGMASGIDT
AAHQGALQAGGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPLDTRPFAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILHECPGLLQNAAVPSYSINKKNKKTEKRTAVR
ETSSEPVLPFSDDLHVRKQPAQANTVAAPTAEDGLLDAMGYDPVHPDILAQQTAWAAADVYARLLEYELDGIVAALPGGR
YQRIKA

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=668293 MON40_RS01655 WP_003779763.1 340873..342093(+) (dprA) [Neisseria macacae ATCC 33926]
ATGACGGAAAACGACCGCCTTGCCTGGCTGCAACTGGCGTTTACGCCTTATGTCGGCGCGGAGGGCTTCTTGCTCCTGCT
GCAACGTTTCGGCAGCGCGAAAGCCGCGCTGGATGCTCCTGTGGAGCAAATTGCCACGATAGTGCGCCACAAGCAGGCAG
CCGAATCTTGGCGCAACGGCGAAAAACGGGCGTTGGCGCAAAAAGCTGCGGAAGCGGCATTGCAATGGGAAAAGCAGGAC
GGCTGCCGTTTGTTGCTGCTGCAAGATGATGATTTTCCCGAAATGCTGACGCAGGGCATTACCGCGCCGCCGGTTTTGTT
TTTGCGCGGTAATGTGCAACTGCTGCACAAACCTTCCGCCGCCATTGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGAGCGTTGAGCGAAAAGGATATTCCCGTCGTGTCGGGTATGGCTTCAGGTATCGACACC
GCCGCCCATCAAGGCGCGTTGCAGGCGGGCGGCGGCACCATCGCCGTATGGGGGACGGGCATAGACCGCATTTACCCGCC
GTCCAATAAAAACCTTGCCTATGAAATCGCCGAAAAAGGATTGATTGTCAGCGAGTTTCCTTTGGATACGCGGCCGTTTG
CGGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGTTGTCGCAGGTTACGCTGGTGGTTGAAGCCGCGTTGGAATCC
GGTTCGCTGATTACCGCCAAGCTGGCGGCGGAGATGGGACGGGAGGTGATGGCGGTGCCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGTCATAAGCTGATTAAAGACGGCGCGAAATTGGTGGAATGTTTGGACGACATCCTTCACGAATGTCCGG
GGCTATTGCAAAATGCGGCAGTTCCATCATATTCTATAAATAAGAAAAACAAAAAAACGGAAAAACGCACTGCCGTCAGA
GAGACGTCGTCTGAACCTGTTTTGCCGTTTTCAGACGACCTTCATGTCCGAAAACAGCCGGCGCAAGCCAATACGGTTGC
CGCGCCGACAGCGGAAGACGGGCTGCTGGACGCCATGGGTTACGACCCCGTTCATCCCGATATATTGGCGCAGCAAACTG
CATGGGCGGCGGCAGACGTTTACGCCCGACTGCTGGAATACGAACTCGACGGCATCGTCGCCGCCTTGCCGGGCGGACGC
TATCAGCGCATAAAAGCATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(340-399)

DNA recombination-mediator protein A (DNA_processg_A)

(78-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

77.833

100

0.778
  dprA Neisseria meningitidis MC58

77.833

100

0.778
  dprA Neisseria gonorrhoeae strain FA1090

75.556

99.754

0.754
  dprA Neisseria gonorrhoeae MS11

75.309

99.754

0.751
  dprA Glaesserella parasuis strain SC1401

39.454

99.261

0.392
  dprA Vibrio cholerae strain A1552

37.624

99.507

0.374

Multiple sequence alignment