Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   MP387_RS08960 Genome accession   NZ_CP094226
Coordinates   1843576..1844238 (-) Length   220 a.a.
NCBI ID   WP_242746552.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1838576..1849238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS08940 (MP387_08940) rplI 1839109..1839561 (-) 453 WP_242746544.1 50S ribosomal protein L9 -
  MP387_RS08945 (MP387_08945) - 1839558..1841531 (-) 1974 WP_242746548.1 DHH family phosphoesterase -
  MP387_RS08950 (MP387_08950) - 1841688..1842866 (-) 1179 WP_242748068.1 acetyl-CoA C-acetyltransferase -
  MP387_RS08955 (MP387_08955) raiA 1842948..1843496 (-) 549 WP_000599111.1 ribosome-associated translation inhibitor RaiA -
  MP387_RS08960 (MP387_08960) comFC/cflB 1843576..1844238 (-) 663 WP_242746552.1 ComF family protein Machinery gene
  MP387_RS08965 (MP387_08965) comFA/cflA 1844235..1845533 (-) 1299 WP_242746562.1 DEAD/DEAH box helicase Machinery gene
  MP387_RS08970 (MP387_08970) - 1845590..1846225 (+) 636 WP_242746564.1 YigZ family protein -
  MP387_RS08975 (MP387_08975) - 1846241..1846684 (+) 444 WP_242746567.1 PH domain-containing protein -
  MP387_RS08980 (MP387_08980) cysK 1846781..1847707 (+) 927 WP_242746571.1 cysteine synthase A -
  MP387_RS08985 (MP387_08985) tsf 1847811..1848851 (-) 1041 WP_242746574.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24975.91 Da        Isoelectric Point: 7.9547

>NTDB_id=668133 MP387_RS08960 WP_242746552.1 1843576..1844238(-) (comFC/cflB) [Streptococcus oralis strain 1648]
MNCLLCGQTTKSELTFSSLFLLKDDCSYLCSDCASSFEKIGENYCPNCMKTGMSTKCQDCKLWCKEGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLTEELKKYRGYQFVSIPLSPERLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=668133 MP387_RS08960 WP_242746552.1 1843576..1844238(-) (comFC/cflB) [Streptococcus oralis strain 1648]
ATGAACTGTTTACTATGTGGCCAGACTACAAAGAGTGAGCTGACTTTTAGCAGTCTCTTCCTTTTGAAGGATGACTGCAG
TTATCTTTGTTCAGATTGTGCTTCTAGTTTTGAGAAGATTGGTGAGAATTATTGCCCAAACTGTATGAAAACAGGCATGT
CAACTAAGTGTCAAGATTGCAAACTTTGGTGTAAAGAAGGAATTCAGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCGATATAAGTTTGATGGCGATTTTTTGCTTAGAAAAGTTTTTGCTTCTGTTCTTACTGA
GGAGCTGAAAAAGTATAGAGGATATCAATTTGTGTCGATTCCCCTAAGCCCTGAAAGATTGCTTGAGAGGGGGTTTAACC
AAGTCGAGGGTTTGGTTGAGGCGGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGCCGTTTGGAAAGGTTAGCTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCTAAGAAGATTTTGCT
GATTGATGATATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(182-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

79.545

100

0.795
  comFC/cflB Streptococcus mitis SK321

78.636

100

0.786
  comFC/cflB Streptococcus pneumoniae D39

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae R6

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae Rx1

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae TIGR4

78.182

100

0.782
  comFC Bacillus subtilis subsp. subtilis str. 168

35.683

100

0.368

Multiple sequence alignment