Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | MP387_RS00865 | Genome accession | NZ_CP094226 |
| Coordinates | 167871..168824 (+) | Length | 317 a.a. |
| NCBI ID | WP_242746975.1 | Uniprot ID | - |
| Organism | Streptococcus oralis strain 1648 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 162871..173824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MP387_RS00820 (MP387_00820) | - | 163053..163418 (+) | 366 | WP_000286396.1 | DUF1033 family protein | - |
| MP387_RS00825 (MP387_00825) | comGA/cglA/cilD | 163482..164423 (+) | 942 | WP_242746934.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| MP387_RS00830 (MP387_00830) | comGB/cglB | 164371..165387 (+) | 1017 | WP_242748017.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| MP387_RS00835 (MP387_00835) | comGC/cglC | 165389..165712 (+) | 324 | WP_000735798.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| MP387_RS00840 (MP387_00840) | comGD/cglD | 165675..166109 (+) | 435 | WP_242746960.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| MP387_RS00845 (MP387_00845) | comGE/cglE | 166072..166374 (+) | 303 | WP_242746963.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| MP387_RS00850 (MP387_00850) | comGF/cglF | 166337..166798 (+) | 462 | WP_242746966.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| MP387_RS00855 (MP387_00855) | comGG/cglG | 166776..167189 (+) | 414 | WP_242746969.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| MP387_RS00860 (MP387_00860) | - | 167222..167812 (+) | 591 | WP_242746972.1 | class I SAM-dependent methyltransferase | - |
| MP387_RS00865 (MP387_00865) | comYH | 167871..168824 (+) | 954 | WP_242746975.1 | class I SAM-dependent methyltransferase | Machinery gene |
| MP387_RS00870 (MP387_00870) | - | 168875..170065 (+) | 1191 | WP_242746978.1 | acetate kinase | - |
| MP387_RS00875 (MP387_00875) | rnpA | 170215..170586 (+) | 372 | WP_000748120.1 | ribonuclease P protein component | - |
| MP387_RS00880 (MP387_00880) | - | 170561..171388 (+) | 828 | WP_242746981.1 | membrane protein insertase YidC | - |
| MP387_RS00885 (MP387_00885) | jag | 171403..172389 (+) | 987 | WP_242746983.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| MP387_RS00890 (MP387_00890) | - | 172445..173068 (+) | 624 | WP_242746984.1 | ribonuclease P | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35583.62 Da Isoelectric Point: 4.2013
>NTDB_id=668081 MP387_RS00865 WP_242746975.1 167871..168824(+) (comYH) [Streptococcus oralis strain 1648]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDTIALLLVLVVEELFKQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDTIALLLVLVVEELFKQEEISILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMSDVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=668081 MP387_RS00865 WP_242746975.1 167871..168824(+) (comYH) [Streptococcus oralis strain 1648]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTTGAGCAAAATAGTATCTACCTGGATGGTGAGACCGAGCTAGAGCAGGTCAAAGAGAACAACC
AAGCCCTTAAACGCTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACTTACCAATTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCGGATACCATTGCCCTCCTATTGGTACTTGTTGTAGAAGAGTTGTTTAA
ACAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGGATTTTGGGGGCTACTTTCTTAACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCAAGTATGTCAGATGTGATTGGTTTGCAG
GCAGGATTTGTTCAAGGCGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAGCAAGGGCTCAAGTACCTTAAGTCAGATGGTTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGATTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTTTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTATTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTTGAGCAAAATAGTATCTACCTGGATGGTGAGACCGAGCTAGAGCAGGTCAAAGAGAACAACC
AAGCCCTTAAACGCTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACTTACCAATTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCGGATACCATTGCCCTCCTATTGGTACTTGTTGTAGAAGAGTTGTTTAA
ACAAGAGGAAATTAGCATCCTCGAAATAGGCTCTGGTATGGGGATTTTGGGGGCTACTTTCTTAACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCAAGTATGTCAGATGTGATTGGTTTGCAG
GCAGGATTTGTTCAAGGCGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCACCATTTGCTGA
TGGAGCAAGGGCTCAAGTACCTTAAGTCAGATGGTTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGATTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTTTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTATTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
57.878 |
98.107 |
0.568 |
| comYH | Streptococcus mutans UA159 |
57.556 |
98.107 |
0.565 |