Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   MN200_RS14595 Genome accession   NZ_CP093968
Coordinates   2979071..2979607 (-) Length   178 a.a.
NCBI ID   WP_242759754.1    Uniprot ID   -
Organism   Acinetobacter sp. LUNF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2974071..2984607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN200_RS14565 (MN200_14565) rpoZ 2974093..2974374 (+) 282 WP_058870403.1 DNA-directed RNA polymerase subunit omega -
  MN200_RS14570 (MN200_14570) - 2974598..2976697 (+) 2100 WP_242759744.1 HD domain-containing protein -
  MN200_RS14575 (MN200_14575) - 2976767..2977150 (+) 384 WP_004691470.1 RidA family protein -
  MN200_RS14580 (MN200_14580) - 2977305..2977499 (+) 195 WP_242759747.1 bacterioferritin-associated ferredoxin -
  MN200_RS14585 (MN200_14585) bfr 2977753..2978217 (+) 465 WP_242759750.1 bacterioferritin -
  MN200_RS14590 (MN200_14590) tfpZ 2978277..2979008 (-) 732 WP_242759752.1 TfpX/TfpZ family type IV pilin accessory protein -
  MN200_RS14595 (MN200_14595) pilE 2979071..2979607 (-) 537 WP_242759754.1 pilin Machinery gene
  MN200_RS14600 (MN200_14600) - 2979802..2980362 (-) 561 WP_242759755.1 TPM domain-containing protein -
  MN200_RS14605 (MN200_14605) - 2980356..2981429 (-) 1074 WP_242759756.1 TPM domain-containing protein -
  MN200_RS14610 (MN200_14610) - 2981466..2982056 (-) 591 WP_005401344.1 LemA family protein -
  MN200_RS14615 (MN200_14615) - 2982205..2983083 (-) 879 WP_242759757.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 17843.59 Da        Isoelectric Point: 9.6909

>NTDB_id=666101 MN200_RS14595 WP_242759754.1 2979071..2979607(-) (pilE) [Acinetobacter sp. LUNF3]
MKSVQKGFTLIELMIVVAIIGILAAIAVPAYQNYTVRSKVTEMLSAAASAKAAVTEGYSSNGMTGVTTAATTLAAEQTAG
TIASKYVNSVVITPASGVITVTSASTANAAASGLPTDAQNKTILFTPFINKVALATSTVGGTIDWACTSLTKSSATARGL
GAAALGSMPAKYVPSECK

Nucleotide


Download         Length: 537 bp        

>NTDB_id=666101 MN200_RS14595 WP_242759754.1 2979071..2979607(-) (pilE) [Acinetobacter sp. LUNF3]
ATGAAATCAGTTCAGAAGGGTTTCACCCTTATCGAATTAATGATCGTTGTTGCAATTATCGGTATTCTTGCTGCGATTGC
TGTACCTGCCTATCAGAACTATACGGTTCGTTCAAAAGTTACAGAAATGTTAAGTGCTGCTGCTAGTGCGAAAGCAGCAG
TAACAGAAGGTTATTCAAGTAACGGAATGACTGGTGTGACAACTGCGGCAACAACTCTTGCTGCTGAGCAAACTGCAGGT
ACAATTGCATCTAAATACGTAAACTCTGTTGTAATTACTCCTGCTTCTGGTGTAATAACTGTAACTTCAGCAAGTACAGC
AAATGCGGCTGCTTCGGGCTTGCCTACTGATGCACAAAATAAAACAATTTTGTTTACGCCGTTTATTAATAAGGTTGCAT
TAGCTACATCAACTGTTGGTGGAACAATTGATTGGGCGTGTACTTCCCTTACTAAATCATCTGCAACAGCTAGAGGTTTG
GGTGCAGCTGCATTAGGCTCTATGCCAGCTAAATATGTTCCTTCTGAATGTAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(36-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

51.546

100

0.562
  pilA2 Legionella pneumophila strain ERS1305867

43.103

97.753

0.421
  pilA Ralstonia pseudosolanacearum GMI1000

41.436

100

0.421
  pilA2 Legionella pneumophila str. Paris

41.954

97.753

0.41
  pilE Neisseria gonorrhoeae strain FA1090

38.202

100

0.382
  comP Acinetobacter baylyi ADP1

36.313

100

0.365