Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MO978_RS05420 Genome accession   NZ_CP093959
Coordinates   1066580..1066984 (-) Length   134 a.a.
NCBI ID   WP_289421652.1    Uniprot ID   -
Organism   Lactococcus lactis strain FAM 17919     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1061580..1071984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO978_RS05390 (MO978_05390) - 1061736..1063268 (+) 1533 WP_373962019.1 Nramp family divalent metal transporter -
  MO978_RS05395 (MO978_05395) - 1063370..1064338 (+) 969 WP_003130649.1 PhoH family protein -
  MO978_RS05400 (MO978_05400) - 1064396..1064875 (+) 480 WP_003130650.1 NUDIX hydrolase -
  MO978_RS05405 (MO978_05405) ybeY 1065027..1065515 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  MO978_RS05410 (MO978_05410) - 1065499..1065954 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  MO978_RS05415 (MO978_05415) - 1065968..1066546 (+) 579 WP_003130655.1 nucleotidyltransferase family protein -
  MO978_RS05420 (MO978_05420) comFC 1066580..1066984 (-) 405 WP_289421652.1 ComF family protein Machinery gene
  MO978_RS05425 (MO978_05425) comFA 1067227..1068549 (-) 1323 WP_058221332.1 DEAD/DEAH box helicase Machinery gene
  MO978_RS05430 (MO978_05430) - 1068606..1069235 (+) 630 WP_003130660.1 YigZ family protein -
  MO978_RS05435 (MO978_05435) - 1069369..1069866 (+) 498 WP_003130662.1 VanZ family protein -
  MO978_RS05440 (MO978_05440) - 1069914..1070933 (+) 1020 WP_003130663.1 DUF475 domain-containing protein -
  MO978_RS05445 (MO978_05445) - 1071049..1071795 (+) 747 WP_003130666.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15747.21 Da        Isoelectric Point: 9.8798

>NTDB_id=665932 MO978_RS05420 WP_289421652.1 1066580..1066984(-) (comFC) [Lactococcus lactis strain FAM 17919]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYITGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=665932 MO978_RS05420 WP_289421652.1 1066580..1066984(-) (comFC) [Lactococcus lactis strain FAM 17919]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAT
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.164

100

0.672
  comFC/cflB Streptococcus mitis NCTC 12261

45.324

100

0.47
  comFC/cflB Streptococcus mitis SK321

45.324

100

0.47
  comFC/cflB Streptococcus pneumoniae Rx1

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae D39

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae R6

43.165

100

0.448
  comFC/cflB Streptococcus pneumoniae TIGR4

43.165

100

0.448
  comFC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.403
  comFC Latilactobacillus sakei subsp. sakei 23K

38.462

97.015

0.373