Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   MQG38_RS03010 Genome accession   NZ_CP093913
Coordinates   620513..620842 (-) Length   109 a.a.
NCBI ID   WP_005548420.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 9R     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615513..625842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG38_RS02985 serA 616269..617501 (-) 1233 WP_005548429.1 phosphoglycerate dehydrogenase -
  MQG38_RS02990 rpiA 617521..618177 (-) 657 WP_005548427.1 ribose-5-phosphate isomerase RpiA -
  MQG38_RS02995 hemW 618276..619445 (-) 1170 WP_258248135.1 radical SAM family heme chaperone HemW -
  MQG38_RS03000 - 619445..619768 (-) 324 WP_005548424.1 YbjQ family protein -
  MQG38_RS03005 - 619807..620400 (-) 594 WP_005548422.1 XTP/dITP diphosphatase -
  MQG38_RS03010 comE1/comEA 620513..620842 (-) 330 WP_005548420.1 helix-hairpin-helix domain-containing protein Machinery gene
  MQG38_RS03015 hflC 621132..622019 (-) 888 WP_005548417.1 protease modulator HflC -
  MQG38_RS03020 hflK 622019..623272 (-) 1254 WP_005548415.1 FtsH protease activity modulator HflK -
  MQG38_RS03025 - 623368..624087 (-) 720 WP_005548412.1 4'-phosphopantetheinyl transferase superfamily protein -
  MQG38_RS03030 thrC 624146..625420 (-) 1275 WP_005538116.1 threonine synthase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11341.10 Da        Isoelectric Point: 9.6912

>NTDB_id=665461 MQG38_RS03010 WP_005548420.1 620513..620842(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 9R]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=665461 MQG38_RS03010 WP_005548420.1 620513..620842(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 9R]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.909

100

0.615
  comEA/comE1 Glaesserella parasuis strain SC1401

53.509

100

0.56
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Acinetobacter baylyi ADP1

39.655

100

0.422
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385