Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   MQG43_RS08035 Genome accession   NZ_CP093910
Coordinates   1609895..1610224 (+) Length   109 a.a.
NCBI ID   WP_005548420.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 27R     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1604895..1615224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG43_RS08015 thrC 1605317..1606591 (+) 1275 WP_005538116.1 threonine synthase -
  MQG43_RS08020 - 1606650..1607369 (+) 720 WP_005548412.1 4'-phosphopantetheinyl transferase superfamily protein -
  MQG43_RS08025 hflK 1607465..1608718 (+) 1254 WP_005548415.1 FtsH protease activity modulator HflK -
  MQG43_RS08030 hflC 1608718..1609605 (+) 888 WP_005548417.1 protease modulator HflC -
  MQG43_RS08035 comE1/comEA 1609895..1610224 (+) 330 WP_005548420.1 helix-hairpin-helix domain-containing protein Machinery gene
  MQG43_RS08040 rdgB 1610337..1610930 (+) 594 WP_258271180.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  MQG43_RS08045 - 1610969..1611292 (+) 324 WP_005548424.1 YbjQ family protein -
  MQG43_RS08050 hemW 1611292..1612461 (+) 1170 WP_005573619.1 radical SAM family heme chaperone HemW -
  MQG43_RS08055 rpiA 1612560..1613216 (+) 657 WP_005548427.1 ribose-5-phosphate isomerase RpiA -
  MQG43_RS08060 serA 1613236..1614468 (+) 1233 WP_258271181.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11341.10 Da        Isoelectric Point: 9.6912

>NTDB_id=665398 MQG43_RS08035 WP_005548420.1 1609895..1610224(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 27R]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGAKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLEKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=665398 MQG43_RS08035 WP_005548420.1 1609895..1610224(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 27R]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAGCCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGCGAAAAAAGCGGAAGCGGTGGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAGGGCATCGGCAAAGCGACCTTAGAAAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.909

100

0.615
  comEA/comE1 Glaesserella parasuis strain SC1401

53.509

100

0.56
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Acinetobacter baylyi ADP1

39.655

100

0.422
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385