Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   MOV92_RS18765 Genome accession   NZ_CP093547
Coordinates   4536396..4536827 (+) Length   143 a.a.
NCBI ID   WP_057944089.1    Uniprot ID   -
Organism   Lysobacter gummosus strain 10.1.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4531396..4541827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOV92_RS18755 (MOV92_18755) - 4532555..4534180 (+) 1626 WP_235113844.1 ATP-binding protein -
  MOV92_RS18760 (MOV92_18760) pilR 4534278..4535687 (+) 1410 WP_057944088.1 sigma-54 dependent transcriptional regulator Regulator
  MOV92_RS18765 (MOV92_18765) pilA2 4536396..4536827 (+) 432 WP_057944089.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MOV92_RS18775 (MOV92_18775) - 4537194..4537607 (+) 414 WP_057944090.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MOV92_RS18780 (MOV92_18780) - 4537732..4539627 (+) 1896 WP_148649004.1 hypothetical protein -
  MOV92_RS18785 (MOV92_18785) - 4539719..4541611 (+) 1893 WP_148649005.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14613.96 Da        Isoelectric Point: 8.1045

>NTDB_id=665198 MOV92_RS18765 WP_057944089.1 4536396..4536827(+) (pilA2) [Lysobacter gummosus strain 10.1.1]
MKKQQGFTLIELMIVIAILGILIAIALPAYQDYTIRTKNVECLNVAAAAKLAVSETAQDRGSLGAITATNTGYSFIASSY
CSTVAITAGTGVIIATTLGGVGGTGGASVAFTLKPTQAAGRIEWDCSVPAGTKMSQVPAECRP

Nucleotide


Download         Length: 432 bp        

>NTDB_id=665198 MOV92_RS18765 WP_057944089.1 4536396..4536827(+) (pilA2) [Lysobacter gummosus strain 10.1.1]
ATGAAGAAGCAGCAAGGCTTTACCCTCATCGAACTGATGATCGTCATCGCGATCCTGGGCATCCTGATCGCCATCGCTCT
GCCGGCGTACCAGGACTACACGATCCGCACCAAGAACGTTGAGTGCCTCAACGTCGCCGCCGCCGCCAAGCTGGCCGTGT
CGGAAACCGCTCAGGACCGTGGCTCGCTCGGCGCGATCACCGCGACCAACACCGGCTACAGCTTCATCGCCAGCAGCTAC
TGCTCCACCGTCGCCATCACTGCCGGTACCGGCGTGATCATCGCGACCACCCTCGGCGGCGTTGGCGGCACCGGCGGCGC
TTCTGTCGCGTTCACCCTGAAGCCGACCCAGGCCGCTGGCCGCATCGAATGGGATTGCTCGGTCCCGGCCGGCACCAAGA
TGTCGCAGGTTCCGGCTGAATGCCGTCCGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

48.611

100

0.49
  pilA2 Legionella pneumophila strain ERS1305867

48.611

100

0.49
  pilA Ralstonia pseudosolanacearum GMI1000

40.476

100

0.476
  comP Acinetobacter baylyi ADP1

42.667

100

0.448
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.857

97.902

0.42
  pilA/pilA1 Eikenella corrodens VA1

36.667

100

0.385