Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   APT55_RS02635 Genome accession   NZ_AP014642
Coordinates   563913..564278 (+) Length   121 a.a.
NCBI ID   WP_017290869.1    Uniprot ID   A0AA97ASN3
Organism   Leptolyngbya boryana dg5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558913..569278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APT55_RS02615 (LBDG_05240) - 559155..559373 (-) 219 WP_026148973.1 DUF433 domain-containing protein -
  APT55_RS02620 (LBDG_05250) tilS 559538..560509 (+) 972 WP_017290872.1 tRNA lysidine(34) synthetase TilS -
  APT55_RS02625 (LBDG_05260) hmpF 560626..562332 (-) 1707 WP_026148972.1 pilus motility taxis protein HmpF -
  APT55_RS02630 (LBDG_05270) - 562552..563784 (+) 1233 WP_017290870.1 response regulator -
  APT55_RS02635 (LBDG_05280) pilH 563913..564278 (+) 366 WP_017290869.1 response regulator transcription factor Machinery gene
  APT55_RS02640 (LBDG_05290) - 564290..564820 (+) 531 WP_017290868.1 chemotaxis protein CheW -
  APT55_RS02650 (LBDG_05300) pilJ 565076..567715 (+) 2640 WP_017290866.1 methyl-accepting chemotaxis protein Machinery gene

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13408.58 Da        Isoelectric Point: 5.1869

>NTDB_id=66480 APT55_RS02635 WP_017290869.1 563913..564278(+) (pilH) [Leptolyngbya boryana dg5]
MSTVLVVEDSVTQREMITDLLKGSGIEVTIATDGVEALEHIQGHCPDLVVLDIVMPRMNGYEVCRRLKADPKTQKVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=66480 APT55_RS02635 WP_017290869.1 563913..564278(+) (pilH) [Leptolyngbya boryana dg5]
ATGAGTACAGTTTTAGTCGTGGAAGATAGTGTCACCCAAAGAGAGATGATCACTGATCTGCTTAAGGGAAGTGGCATTGA
GGTGACGATCGCGACCGATGGCGTTGAAGCCTTGGAACACATTCAAGGGCATTGTCCTGATCTTGTGGTTTTGGATATTG
TCATGCCTCGAATGAATGGCTATGAGGTTTGCCGTCGGCTCAAAGCCGATCCCAAAACTCAGAAAGTGCCAGTCGTGATG
TGTTCGTCCAAAGGAGAAGAGTTCGATCGCTATTGGGGCATGAAGCAGGGGGCAGATGCCTATATTGCTAAGCCCTTTCA
GCCCACTGAACTCGTCGGTACAGTCAAACAATTGTTGCGCGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372

Multiple sequence alignment