Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MM271_RS23655 Genome accession   NZ_CP093300
Coordinates   4832363..4832863 (-) Length   166 a.a.
NCBI ID   WP_243530288.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4827363..4837863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS23635 (MM271_23635) rplI 4828440..4828886 (-) 447 WP_243530283.1 50S ribosomal protein L9 -
  MM271_RS23640 (MM271_23640) - 4828888..4830852 (-) 1965 WP_243530285.1 DHH family phosphoesterase -
  MM271_RS23645 (MM271_23645) - 4830920..4831864 (-) 945 WP_243530287.1 YybS family protein -
  MM271_RS23650 (MM271_23650) rpsR 4832062..4832298 (-) 237 WP_026675533.1 30S ribosomal protein S18 -
  MM271_RS23655 (MM271_23655) ssbA 4832363..4832863 (-) 501 WP_243530288.1 single-stranded DNA-binding protein Machinery gene
  MM271_RS23660 (MM271_23660) rpsF 4832894..4833181 (-) 288 WP_026675531.1 30S ribosomal protein S6 -
  MM271_RS23665 (MM271_23665) ychF 4833313..4834413 (-) 1101 WP_243530293.1 redox-regulated ATPase YchF -
  MM271_RS23670 (MM271_23670) - 4834560..4834757 (-) 198 WP_243530295.1 DUF951 domain-containing protein -
  MM271_RS23675 (MM271_23675) - 4834842..4835864 (-) 1023 WP_243534653.1 hypothetical protein -
  MM271_RS23680 (MM271_23680) yyaC 4835959..4836609 (+) 651 WP_243530298.1 spore protease YyaC -
  MM271_RS23685 (MM271_23685) - 4836736..4837476 (-) 741 WP_243530300.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18319.06 Da        Isoelectric Point: 4.7719

>NTDB_id=663305 MM271_RS23655 WP_243530288.1 4832363..4832863(-) (ssbA) [Alkalihalobacillus sp. LMS39]
MMNRVILVGRLTKDPELRYTPNGVAIANFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYENNEGKRVYITEVVAESVQFLEPRNASGGGQDSNYYGGGGQNPSGQGGYGQQNQNQNRNQTKLNEDPFANDGQTIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=663305 MM271_RS23655 WP_243530288.1 4832363..4832863(-) (ssbA) [Alkalihalobacillus sp. LMS39]
ATGATGAACCGTGTCATTCTTGTCGGCCGTTTAACGAAAGATCCTGAATTACGGTATACACCAAATGGTGTGGCGATTGC
TAATTTTACACTTGCTGTGAACCGGGCGTTTACAAATCAGCAAGGAGAACGTGAAGCAGACTTTATCAATTGTGTCGTGT
GGCGTAAACCGGCTGAAAATGTAGCCAACTTCTTGAAAAAGGGTAGCTTGGCAGGTGTTGATGGTCGTGTGCAAACTCGG
AATTATGAAAATAATGAAGGTAAGCGTGTCTACATCACAGAAGTTGTTGCAGAAAGCGTTCAATTTTTAGAGCCACGTAA
TGCTAGTGGTGGTGGACAAGATTCTAATTATTATGGCGGTGGAGGACAAAATCCATCAGGCCAAGGTGGATACGGTCAAC
AAAATCAAAATCAAAATCGTAATCAGACAAAATTAAACGAAGATCCATTTGCAAATGATGGTCAAACGATTGATATTTCT
GATGACGATTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.362

100

0.729
  ssb Latilactobacillus sakei subsp. sakei 23K

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

63.855

0.398
  ssb Vibrio cholerae strain A1552

33.514

100

0.373
  ssb Neisseria meningitidis MC58

34.483

100

0.361
  ssb Neisseria gonorrhoeae MS11

34.483

100

0.361