Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   OG289_RS13560 Genome accession   NZ_CP108513
Coordinates   3123201..3123575 (+) Length   124 a.a.
NCBI ID   WP_327314257.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01235     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118201..3128575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG289_RS13535 (OG289_13560) sufD 3118314..3119531 (-) 1218 WP_327314253.1 Fe-S cluster assembly protein SufD -
  OG289_RS13540 (OG289_13565) sufB 3119589..3121010 (-) 1422 WP_030677270.1 Fe-S cluster assembly protein SufB -
  OG289_RS13545 (OG289_13570) - 3121007..3121741 (-) 735 WP_327314254.1 metalloregulator ArsR/SmtB family transcription factor -
  OG289_RS13550 (OG289_13575) - 3121925..3122737 (+) 813 WP_327314255.1 AAC(3) family N-acetyltransferase -
  OG289_RS13555 (OG289_13580) - 3122815..3123201 (+) 387 WP_327314256.1 response regulator -
  OG289_RS13560 (OG289_13585) chiS 3123201..3123575 (+) 375 WP_327314257.1 response regulator Regulator
  OG289_RS13565 (OG289_13590) - 3123572..3124678 (+) 1107 WP_327314258.1 HEAT repeat domain-containing protein -
  OG289_RS13570 (OG289_13595) - 3124675..3126168 (+) 1494 WP_327314259.1 glycosyltransferase -
  OG289_RS13575 (OG289_13600) - 3126165..3128252 (+) 2088 WP_327314260.1 ATP-binding protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13491.48 Da        Isoelectric Point: 4.3825

>NTDB_id=661965 OG289_RS13560 WP_327314257.1 3123201..3123575(+) (chiS) [Streptomyces sp. NBC_01235]
MARVLIADDDADIRDLVAFKLVQSGHQVTAVEDGMAALRTVREQPLDLVLLDIRMPGLSGLDVCRELRACDDTASLPVIL
ITARSQEGDVELGFAAGADDYIVKPFSPRELSSRVTAVLTRVER

Nucleotide


Download         Length: 375 bp        

>NTDB_id=661965 OG289_RS13560 WP_327314257.1 3123201..3123575(+) (chiS) [Streptomyces sp. NBC_01235]
ATGGCTCGTGTCCTGATCGCCGACGACGACGCCGACATTCGGGACCTCGTGGCGTTCAAGCTGGTCCAGAGCGGTCACCA
GGTCACCGCCGTGGAGGACGGCATGGCCGCGCTGCGCACGGTGCGCGAGCAGCCGCTGGATCTCGTACTCCTCGACATAC
GCATGCCGGGGCTGTCGGGGCTGGACGTGTGCCGGGAGCTGCGCGCCTGCGACGACACCGCGTCACTGCCCGTCATCCTC
ATCACAGCCCGGTCCCAGGAAGGAGACGTCGAACTCGGCTTCGCCGCGGGCGCCGACGACTACATCGTCAAGCCCTTCAG
CCCGCGCGAGCTGTCCAGCCGGGTCACCGCGGTGCTCACCCGGGTCGAGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

44.915

95.161

0.427
  vicR Streptococcus mutans UA159

40.323

100

0.403
  scnR Streptococcus mutans UA159

39.167

96.774

0.379
  micA Streptococcus pneumoniae Cp1015

37.19

97.581

0.363
  pilH Synechocystis sp. PCC 6803

37.815

95.968

0.363
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.885

98.387

0.363