Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ML603_RS01650 Genome accession   NZ_CP092887
Coordinates   308173..310143 (+) Length   656 a.a.
NCBI ID   WP_129555301.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 303173..315143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS01630 (ML603_01630) sufU 303222..303698 (+) 477 WP_129555298.1 Fe-S cluster assembly sulfur transfer protein SufU -
  ML603_RS01635 (ML603_01635) sufB 303691..305109 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  ML603_RS01640 (ML603_01640) - 305283..306464 (-) 1182 WP_241067392.1 serine hydrolase -
  ML603_RS01645 (ML603_01645) pbp3 306603..307841 (-) 1239 WP_241067393.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ML603_RS01650 (ML603_01650) amiA 308173..310143 (+) 1971 WP_129555301.1 peptide ABC transporter substrate-binding protein Regulator
  ML603_RS01655 (ML603_01655) amiC 310209..311711 (+) 1503 WP_138124802.1 ABC transporter permease Regulator
  ML603_RS01660 (ML603_01660) amiD 311711..312637 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  ML603_RS01665 (ML603_01665) amiE 312646..313716 (+) 1071 WP_241067395.1 ABC transporter ATP-binding protein Regulator
  ML603_RS01670 (ML603_01670) amiF 313709..314632 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71974.27 Da        Isoelectric Point: 4.9448

>NTDB_id=660910 ML603_RS01650 WP_129555301.1 308173..310143(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAIDGKSEALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSQGKEFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDVVAATGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMKLQDKPVTAKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=660910 ML603_RS01650 WP_129555301.1 308173..310143(+) (amiA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTTGATGGTCTTTTGGAAAATGATGAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCGATTGATGGCAAGT
CTGAAGCTTTATATGTTGTCGAAGACTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTCGATTTCAAAGAGGTC
GGTGTTAAAGCCCTTGACGATAAAACCGTTCAATATACTTTGAACAAACCGGAAAGTTACTGGAACTCAAAAACAACTTA
TAGCGTTCTCTTCCCAGTCAATGCGAAATTCTTGAAATCACAAGGTAAAGAGTTTGGGACAACAGATCCATCATCAATCC
TTGTTAATGGTGCTTATTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTATTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGAATGTTGACTGGTGATATTCGTCATTTAACATGGAACTTGAACCGTACTTCCTTCAAAAACACTAAGAAA
GACCCAGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTCGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTTGTTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCTCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTACAGGCCTTGATACCTACCAAACTTTACTTGACGAAGCAGCAGCGATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTATCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.681

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

49.547

100

0.5
  amiA3 Streptococcus thermophilus LMD-9

49.245

100

0.497