Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ML603_RS01670 Genome accession   NZ_CP092887
Coordinates   313709..314632 (+) Length   307 a.a.
NCBI ID   WP_129555304.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 308709..319632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS01655 (ML603_01655) amiC 310209..311711 (+) 1503 WP_138124802.1 ABC transporter permease Regulator
  ML603_RS01660 (ML603_01660) amiD 311711..312637 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  ML603_RS01665 (ML603_01665) amiE 312646..313716 (+) 1071 WP_241067395.1 ABC transporter ATP-binding protein Regulator
  ML603_RS01670 (ML603_01670) amiF 313709..314632 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.97 Da        Isoelectric Point: 6.4058

>NTDB_id=660914 ML603_RS01670 WP_129555304.1 313709..314632(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKKMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQVEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=660914 ML603_RS01670 WP_129555304.1 313709..314632(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACATTCTCTTTAGTTGGAGAATCTGGAAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGCTCTGGTGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAGCGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACTCGCTATCCTCACGAATTTTCAGGGGGGCAACGCCAGCGGATCGGT
ATCGCTAGAGCCCTAGTGATGAATCCCGAATTTGTCATTGCTGACGAACCTATCTCCGCTCTAGACGTCTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAAAATGCAAGCCGAAAAAGGACTGACATATCTTTTCATCGCCCACGACCTATCAGTTG
TTCGCTTCATTTCAGATCGTATTGCGGTTATCCATAAAGGTGTTATTGTGGAGGTTGCTGAAACAGAAGAACTGTTCAAT
AATCCTATCCACCCGTATACAAAATCTCTTTTATCAGCTGTTCCGATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAATCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTCT
GGGCTAATCAAGTAGAAGTTGAAAAGTATAAAGCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.085

100

0.821
  amiF Streptococcus thermophilus LMD-9

81.759

100

0.818
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814