Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG709_RS16810 Genome accession   NZ_CP108455
Coordinates   3657660..3658259 (-) Length   199 a.a.
NCBI ID   WP_250300891.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3652660..3663259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG709_RS16775 (OG709_16780) - 3652917..3653261 (+) 345 WP_250300898.1 helix-turn-helix transcriptional regulator -
  OG709_RS16780 (OG709_16785) - 3653381..3653836 (-) 456 WP_266642153.1 DUF3515 family protein -
  OG709_RS16785 (OG709_16790) - 3653889..3654392 (+) 504 WP_250300896.1 RICIN domain-containing protein -
  OG709_RS16790 (OG709_16795) - 3654463..3654912 (-) 450 WP_266642151.1 hypothetical protein -
  OG709_RS16795 (OG709_16800) - 3655008..3656126 (-) 1119 WP_329166752.1 hypothetical protein -
  OG709_RS16800 (OG709_16805) - 3656501..3656950 (-) 450 WP_250300893.1 SRPBCC family protein -
  OG709_RS16805 (OG709_16810) - 3657011..3657667 (-) 657 WP_250300892.1 DUF5063 domain-containing protein -
  OG709_RS16810 (OG709_16815) recR 3657660..3658259 (-) 600 WP_250300891.1 recombination mediator RecR Machinery gene
  OG709_RS16815 (OG709_16820) - 3658381..3658716 (-) 336 WP_250300890.1 YbaB/EbfC family nucleoid-associated protein -
  OG709_RS16820 (OG709_16825) - 3659152..3659964 (+) 813 WP_329166756.1 SLATT domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21760.14 Da        Isoelectric Point: 5.1558

>NTDB_id=660913 OG709_RS16810 WP_250300891.1 3657660..3658259(-) (recR) [Streptomyces sp. NBC_01267]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHSLLEVKDKVRFCAVCGNVAQAELCGICRDTRRDLTV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660913 OG709_RS16810 WP_250300891.1 3657660..3658259(-) (recR) [Streptomyces sp. NBC_01267]
TTGTACGAAGGCGTGGTCCAGGACCTTATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAACGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACCGACGTCCGCCGCCTCGCGCATTCGCTGCTCGAAGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGCAACGTCGCGCAGGCCGAGCTCTGCGGGATCTGCCGGGACACCCGGCGTGACCTGACGGTC
ATCTGTGTCGTCGAGGAGCCGAAGGACGTCGTGGCGGTCGAGCGGACGCGTGAGTTCCGCGGTCGCTACCACGTGCTCGG
TGGCGCCATCAGCCCCATCGAGGGCGTCGGCCCCGACGACCTGCGGATCCGGGAGCTGCTGGCCAGGCTCGCGGACGGCA
CGGTCACCGAGCTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCACGCATGATCAAG
CCCATGGGTTTGAAGGTCACTCGCCTGGCGAGTGGTCTTCCTGTTGGTGGAGACCTGGAATACGCGGACGAGGTCACGCT
CGGTCGTGCCTTTGAGGGGAGACGACTACTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462