Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ML603_RS01665 Genome accession   NZ_CP092887
Coordinates   312646..313716 (+) Length   356 a.a.
NCBI ID   WP_241067395.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 307646..318716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS01650 (ML603_01650) amiA 308173..310143 (+) 1971 WP_129555301.1 peptide ABC transporter substrate-binding protein Regulator
  ML603_RS01655 (ML603_01655) amiC 310209..311711 (+) 1503 WP_138124802.1 ABC transporter permease Regulator
  ML603_RS01660 (ML603_01660) amiD 311711..312637 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  ML603_RS01665 (ML603_01665) amiE 312646..313716 (+) 1071 WP_241067395.1 ABC transporter ATP-binding protein Regulator
  ML603_RS01670 (ML603_01670) amiF 313709..314632 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39616.63 Da        Isoelectric Point: 5.8521

>NTDB_id=660913 ML603_RS01665 WP_241067395.1 312646..313716(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TELKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVHKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=660913 ML603_RS01665 WP_241067395.1 312646..313716(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGAACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCGATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGACGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCGTTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGATAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCATTTGCAC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCATAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.27

94.663

0.542