Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ML603_RS01660 Genome accession   NZ_CP092887
Coordinates   311711..312637 (+) Length   308 a.a.
NCBI ID   WP_003049687.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 306711..317637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS01650 (ML603_01650) amiA 308173..310143 (+) 1971 WP_129555301.1 peptide ABC transporter substrate-binding protein Regulator
  ML603_RS01655 (ML603_01655) amiC 310209..311711 (+) 1503 WP_138124802.1 ABC transporter permease Regulator
  ML603_RS01660 (ML603_01660) amiD 311711..312637 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  ML603_RS01665 (ML603_01665) amiE 312646..313716 (+) 1071 WP_241067395.1 ABC transporter ATP-binding protein Regulator
  ML603_RS01670 (ML603_01670) amiF 313709..314632 (+) 924 WP_129555304.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.93 Da        Isoelectric Point: 9.2024

>NTDB_id=660912 ML603_RS01660 WP_003049687.1 311711..312637(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
METIDKSKFRFVERDSRASEVIDTPAYSYWKSVFRQFFSKKSTIFMLMILVTILLMSFIYPMFANYDFGDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINVTIGVILGAIWGVSKAFDKVMIEIYNVISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAIKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=660912 ML603_RS01660 WP_003049687.1 311711..312637(+) (amiD) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGGAAACGATTGATAAATCAAAATTTCGATTTGTTGAGCGCGATAGCAGAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTATTGGAAATCCGTATTCCGTCAATTTTTCTCTAAAAAGTCTACTATCTTCATGCTAATGATTTTAGTGACCATCT
TATTGATGAGTTTTATTTACCCAATGTTTGCGAATTATGACTTTGGTGATGTGAGTAATATCAACGATTTCTCGAAACGT
TATATTTGGCCCAACGCCGAATACTGGTTTGGAACAGATAAAAACGGACAATCTTTGTTTGATGGTGTCTGGTATGGAGC
GCGTAACTCTATCCTAATTTCTGTTATAGCAACATTGATTAATGTGACTATCGGAGTTATTTTAGGAGCTATTTGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAGATTTATAATGTCATCTCAAACATTCCTTCAATGTTAATTATCATTGTT
TTGACCTATTCATTAGGTGCTGGTTTTTGGAATTTGATTTTAGCTTTCTGTATCACTGGATGGATCGGTGTAGCTTACTC
TATCCGTGTGCAAATCTTACGTTACCGTGATTTGGAGTACAACCTTGCTAGTCAAACCCTAGGAACACCAATGTACAAAA
TTGCCATTAAGAACCTCTTGCCTCAATTGGTTTCAGTTATCATGACCATGTTGTCACAAATGTTACCAGTGTACGTGTCT
TCTGAGGCTTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACGACTCCAAGCTTAGGGCGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCTTACCTCTTCTGGATTCCCTTAGTAACGTTGATTTTAGTATCATTACCATTGTATATTG
TCGGACAAAACCTGGCAGATGCCAGCGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.052

100

0.731
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731