Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MK848_RS04615 Genome accession   NZ_CP092824
Coordinates   942241..942537 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain S1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 937241..947537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS04570 (MK848_04575) tasA 937649..938434 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  MK848_RS04575 (MK848_04580) sipW 938498..939070 (-) 573 WP_003246088.1 signal peptidase I SipW -
  MK848_RS04580 (MK848_04585) tapA 939054..939815 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  MK848_RS04585 (MK848_04590) yqzG 940087..940413 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  MK848_RS04590 (MK848_04595) spoIITA 940455..940634 (-) 180 WP_003230176.1 YqzE family protein -
  MK848_RS04595 (MK848_04600) comGG 940705..941079 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  MK848_RS04600 (MK848_04605) comGF 941080..941463 (-) 384 WP_015251713.1 ComG operon protein ComGF Machinery gene
  MK848_RS04605 (MK848_04610) comGE 941489..941836 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  MK848_RS04610 (MK848_04615) comGD 941820..942251 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  MK848_RS04615 (MK848_04620) comGC 942241..942537 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  MK848_RS04620 (MK848_04625) comGB 942551..943588 (-) 1038 WP_101172386.1 comG operon protein ComGB Machinery gene
  MK848_RS04625 (MK848_04630) comGA 943575..944645 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  MK848_RS04630 (MK848_04635) - 944858..945055 (-) 198 WP_029726717.1 hypothetical protein -
  MK848_RS04635 (MK848_04640) corA 945057..946010 (-) 954 WP_004399136.1 magnesium transporter CorA -
  MK848_RS04640 (MK848_04645) yqhB 946153..947481 (+) 1329 WP_029726716.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=660413 MK848_RS04615 WP_003230162.1 942241..942537(-) (comGC) [Bacillus subtilis strain S1]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=660413 MK848_RS04615 WP_003230162.1 942241..942537(-) (comGC) [Bacillus subtilis strain S1]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378