Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG194_RS20110 Genome accession   NZ_CP108427
Coordinates   4543302..4544711 (+) Length   469 a.a.
NCBI ID   WP_327402210.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4538302..4549711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG194_RS20095 (OG194_20070) - 4539492..4540445 (-) 954 WP_327402207.1 Ppx/GppA phosphatase family protein -
  OG194_RS20100 (OG194_20075) - 4540529..4541395 (+) 867 WP_327402208.1 hypothetical protein -
  OG194_RS20105 (OG194_20080) - 4541406..4543103 (-) 1698 WP_327402209.1 hypothetical protein -
  OG194_RS20110 (OG194_20085) radA/sms 4543302..4544711 (+) 1410 WP_327402210.1 DNA repair protein RadA Machinery gene
  OG194_RS20115 (OG194_20090) disA 4544848..4545906 (+) 1059 WP_327407138.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG194_RS20120 (OG194_20095) - 4545926..4546753 (-) 828 WP_327402211.1 hypothetical protein -
  OG194_RS20125 (OG194_20100) - 4546959..4547903 (+) 945 WP_327402212.1 A/G-specific adenine glycosylase -
  OG194_RS20130 (OG194_20105) - 4548245..4548784 (+) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG194_RS20135 (OG194_20110) - 4548781..4549461 (+) 681 WP_327407139.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49723.90 Da        Isoelectric Point: 8.2550

>NTDB_id=660409 OG194_RS20110 WP_327402210.1 4543302..4544711(+) (radA/sms) [Streptomyces sp. NBC_01288]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVIEVADIGDALRVLPRSRKREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=660409 OG194_RS20110 WP_327402210.1 4543302..4544711(+) (radA/sms) [Streptomyces sp. NBC_01288]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGTTGGCAGACGGCCAAGTGGCT
GGGCCGCTGCTCCGAGTGCCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACACCCGGCC
GCGTCACCACATCAGCGGTGCCCATCGGCCAGGTCGACGCCCGTCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTCCCCGGAGCGGTCGTCCTCGTCGCGGGCGAGCCCGGAGTCGGCAAGTCGACCCT
CCTCCTGGACGTGGCGGCCAAGGCGGCGAGCGAAGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTGATCCTGGACTCCGTCCAGACGGTGGCCTCCCCGGAGATCGACGGTGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGGGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTGGTGCTCTCCTTC
GAGGGCGACCGCCACGCCCGCCTGCGCCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCTTGGTGGCCGAGGTCCAGGCCCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACCACTTCCGGCCTGGAGACATCCCGGGTCTCGATGATGCTCGCGGTCCTGGAACAGCGCGGCAG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTGGGCGGAGTGAAACTCTCCGAACCAGCGGCAGATCTGG
CCATCGCGCTCGCCCTGGCCTCCGCCGCAAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTAGGCCTC
GCGGGCGAGGTCAGAAGGGTCACGGGCGTCCAGCGCAGACTCTCCGAAGCACACCGCCTAGGCTTCACCCACGCCCTCGT
TCCGAGCGACCCGGGCAAGATCCCGGCAGGCATGAAGGTCATCGAAGTAGCCGACATAGGAGACGCTCTCCGGGTCCTTC
CAAGGTCCCGTAAGCGAGAGGCCCCACGGGACGCCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus mitis SK321

42.257

96.375

0.407
  radA Streptococcus mitis NCTC 12261

42.257

96.375

0.407
  radA Streptococcus pneumoniae Rx1

42.316

95.736

0.405
  radA Streptococcus pneumoniae TIGR4

42.316

95.736

0.405
  radA Streptococcus pneumoniae D39

42.316

95.736

0.405
  radA Streptococcus pneumoniae R6

42.316

95.736

0.405