Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MJ595_RS08845 Genome accession   NZ_CP092489
Coordinates   2020861..2022957 (+) Length   698 a.a.
NCBI ID   WP_263082090.1    Uniprot ID   -
Organism   Endozoicomonas sp. Mp262     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2015861..2027957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ595_RS08825 - 2017881..2018945 (+) 1065 WP_263082086.1 pilus assembly protein PilM -
  MJ595_RS08830 - 2018945..2019505 (+) 561 WP_263082087.1 PilN domain-containing protein -
  MJ595_RS08835 pilO 2019502..2020119 (+) 618 WP_263082088.1 type 4a pilus biogenesis protein PilO -
  MJ595_RS08840 - 2020116..2020646 (+) 531 WP_263082089.1 pilus assembly protein PilP -
  MJ595_RS08845 pilQ 2020861..2022957 (+) 2097 WP_263082090.1 type IV pilus secretin PilQ family protein Machinery gene
  MJ595_RS08850 aroK 2023163..2023693 (+) 531 WP_263082091.1 shikimate kinase AroK -
  MJ595_RS08855 aroB 2023686..2024780 (+) 1095 WP_263082092.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 74933.08 Da        Isoelectric Point: 4.6692

>NTDB_id=658051 MJ595_RS08845 WP_263082090.1 2020861..2022957(+) (pilQ) [Endozoicomonas sp. Mp262]
MKPLLTHAGVLIDMDATSRPDGRVELRLAFDGPAPNIKGYSIEQPPRVSIDLPDTSSGLPKYNELGFDVAQSVTVLEAGK
RTRLVVNQKTPTGFSSKVDGNLLYIALGDNSKPAAAPVTSMPPQEMYTPGIGAAYGLSPSVEKSVAGSVTQIDFHRGDAG
EGNVVVSLSSSGVPVDINEVSGRIRLQFQGEIIPEKLQNRLDVIDFATPVKYIDAKVESGNAIIVIEPKAGYDYLVYQAD
NKLTVSVKPLTGKSLAKKRKGLTYKGEKLSLNFQNIEVRAVLQLIADFTSLNLVASDTVTGNVTLRLQNVPWDQALDIVL
KAKGLDKRLEGNVLTVAPADEIAARERQLLENEKQIRELAPVYTDLIPINYADAAEIAAVLAGSGEESETLLTEQGSVQV
VERTNSLLIKDTQAKLDELRELLEQLDIPVRQVLIEARVVTLSTSYRKELGVKWTGGVSNSSNNRYILGGGRGTNIKFEE
GTAIYDANNNFDMSALKTGFTGENIFTDLGVTGDTAAALGIGFATNGTLLNLELSALLSDGGGEVISQPKVITADKQTAT
IKAGKQIPYTEASSSGAATVSFQDAVLSLEVTPQITPEGRVIMDIKITNDDSTETAPNGVPIIDKNEITTQVLVDDGETV
VLGGVFKQTKSNRVDKVPVLGDIPYVGNLFRRKANRDEKSELMVFITPRVVSEGVNLP

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=658051 MJ595_RS08845 WP_263082090.1 2020861..2022957(+) (pilQ) [Endozoicomonas sp. Mp262]
GTGAAACCACTGCTTACCCATGCCGGTGTCCTGATTGACATGGATGCCACCTCCAGACCCGATGGCCGGGTTGAACTGCG
TCTGGCCTTTGATGGTCCTGCCCCCAATATTAAAGGGTATAGTATTGAGCAGCCTCCCAGGGTTTCGATTGACTTGCCAG
ACACCAGTAGTGGCTTGCCCAAGTATAATGAGCTGGGTTTTGATGTTGCTCAAAGTGTCACCGTACTTGAGGCAGGCAAA
AGAACAAGGCTTGTGGTTAATCAGAAAACTCCCACAGGATTTTCCAGTAAAGTGGATGGCAACCTGCTTTATATCGCCCT
GGGTGATAACAGCAAGCCTGCTGCCGCACCAGTTACCTCAATGCCACCGCAGGAAATGTACACTCCGGGTATAGGGGCCG
CCTATGGTTTATCGCCTTCTGTAGAAAAATCCGTGGCGGGTTCAGTGACCCAAATTGATTTTCATAGAGGTGATGCCGGT
GAGGGGAATGTTGTCGTCTCTTTATCAAGCTCGGGCGTACCTGTTGACATTAATGAAGTCTCTGGCCGCATCAGGTTACA
GTTTCAGGGGGAGATCATTCCCGAAAAATTGCAAAACCGACTGGATGTTATCGATTTTGCCACACCGGTTAAATACATTG
ATGCAAAGGTTGAGAGTGGAAATGCCATCATAGTTATCGAGCCCAAGGCAGGGTATGACTATCTGGTTTATCAGGCGGAT
AATAAATTGACGGTTAGTGTAAAACCTCTCACAGGCAAAAGCCTGGCTAAAAAAAGGAAAGGGCTGACTTATAAGGGAGA
GAAGTTATCCCTTAACTTCCAGAATATTGAAGTGAGAGCTGTGTTACAGCTTATTGCTGACTTTACCAGTTTGAACCTGG
TGGCCTCGGACACAGTGACAGGTAATGTCACCTTAAGATTACAAAACGTACCCTGGGACCAGGCCCTTGATATTGTGCTC
AAGGCAAAAGGTTTAGACAAACGCCTTGAGGGGAATGTTTTAACGGTGGCCCCTGCCGATGAGATCGCTGCGAGAGAAAG
GCAGTTACTGGAAAATGAAAAGCAAATCAGGGAGCTGGCTCCGGTTTATACGGATCTGATTCCCATCAATTATGCGGATG
CCGCTGAAATCGCCGCGGTGCTGGCCGGAAGTGGAGAGGAAAGTGAAACCCTTCTTACCGAGCAAGGATCGGTACAGGTG
GTTGAAAGAACCAATAGCCTCCTGATTAAGGACACCCAGGCCAAGCTTGATGAGCTGAGAGAGTTACTGGAGCAGCTGGA
TATTCCGGTGAGGCAAGTATTGATAGAAGCCCGGGTGGTGACATTAAGTACCAGCTATAGAAAAGAGCTGGGTGTGAAAT
GGACCGGAGGAGTGAGTAATTCCAGCAACAATCGCTATATTCTTGGGGGAGGACGAGGAACCAATATCAAGTTTGAAGAG
GGAACGGCTATCTATGATGCCAATAATAACTTTGATATGTCGGCCCTTAAGACCGGGTTTACCGGAGAAAATATATTTAC
CGACCTGGGTGTGACTGGAGATACCGCCGCTGCCCTGGGCATTGGCTTTGCCACCAATGGTACTCTCCTGAATTTGGAGC
TTTCTGCCCTGCTAAGCGATGGTGGTGGTGAGGTTATTTCGCAGCCAAAAGTGATTACGGCAGATAAGCAAACGGCCACC
ATCAAGGCGGGTAAGCAGATTCCCTATACAGAGGCATCATCCAGTGGGGCAGCTACCGTATCCTTTCAGGATGCTGTATT
GTCGCTGGAGGTGACTCCCCAGATTACCCCTGAGGGGCGGGTGATCATGGATATCAAGATCACTAATGATGACTCAACAG
AAACCGCTCCCAATGGCGTTCCCATTATTGATAAAAATGAGATTACAACCCAGGTGCTGGTGGATGATGGAGAGACGGTT
GTTCTGGGAGGGGTGTTCAAACAGACTAAAAGTAACCGGGTTGATAAAGTGCCCGTACTGGGCGATATCCCTTATGTAGG
AAACCTGTTCCGGCGCAAGGCCAACAGGGATGAAAAAAGTGAGTTAATGGTTTTTATTACCCCCCGAGTGGTTTCAGAAG
GTGTTAACCTGCCATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(537-691)

Secretin and TonB N terminus short domain (STN)

(292-338)

Bacterial type II/III secretion system short domain (Secretin_N)

(366-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

49.566

99.14

0.491
  comQ Acinetobacter baylyi ADP1

41.277

100

0.417
  pilQ Acinetobacter baumannii D1279779

40.788

100

0.415
  pilQ Acinetobacter baumannii strain A118

40.788

100

0.415
  pilQ Legionella pneumophila strain ERS1305867

36.377

100

0.365
  pilQ Legionella pneumophila strain Lp02

36.377

100

0.365