Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MJX77_RS07035 Genome accession   NZ_CP092454
Coordinates   1477716..1478774 (+) Length   352 a.a.
NCBI ID   WP_252061013.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472716..1483774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS07020 - 1473780..1474112 (+) 333 WP_252061008.1 hypothetical protein -
  MJX77_RS07025 - 1474115..1474939 (+) 825 WP_252061010.1 putative RNA methyltransferase -
  MJX77_RS07030 ponA 1474993..1477554 (-) 2562 WP_191900376.1 penicillin-binding protein PBP1a -
  MJX77_RS07035 pilM 1477716..1478774 (+) 1059 WP_252061013.1 pilus assembly protein PilM Machinery gene
  MJX77_RS07040 pilN 1478774..1479415 (+) 642 WP_013196695.1 PilN domain-containing protein Machinery gene
  MJX77_RS07045 pilO 1479412..1480161 (+) 750 WP_252061016.1 type 4a pilus biogenesis protein PilO Machinery gene
  MJX77_RS07050 pilP 1480172..1480699 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  MJX77_RS07055 pilQ 1480763..1482892 (+) 2130 WP_252061018.1 type IV pilus secretin PilQ family protein Machinery gene
  MJX77_RS07060 aroK 1482904..1483473 (+) 570 WP_004789808.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39060.66 Da        Isoelectric Point: 4.4217

>NTDB_id=657721 MJX77_RS07035 WP_252061013.1 1477716..1478774(+) (pilM) [Acinetobacter sp. AHP123]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAINLANPQTSNAAI
AVPTSTVIHKTIEMDTDMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQSGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEVLEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDIQKLENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=657721 MJX77_RS07035 WP_252061013.1 1477716..1478774(+) (pilM) [Acinetobacter sp. AHP123]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTGGAAAGCTATGCTTTGATGCCTTTACCCGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAGGCAGTAGCAGAAGCTTTGGAACGGGCGATTAATTTAGCAAATCCCCAAACCAGTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATAGAAATGGATACAGATATGAATGATGATGAACGAGAAGTTCAGAT
TCGTTTAGATGCGGAGCAGTATATACCGTTCCCTTTGGATGAAGTGAGTCTTGATTTTGAGGTTTTACCAGATCGACTGC
CTAATCCAAACCGTGTAAATGTACTTCTAGTTGCAACAAGAACAGAAAATGTTGAAACACGAGTAGAAGTGCTGGAACTG
GTAGATCTAACGCCTAAGCTTGCTGATGTCGAAAGTTATGCTGTCGAGCGTGCTTTTAGTGTATTTGCTGATAGTTTGCC
CATGGGTGCGAATACCATTGGTATTTTAGATATCGGCCATACCATGACTACATTATCGGTTATGCAAAGTGGCAAAATCA
TTTATACCCGTGAACAAGTCTTCGGCGGCAAGCAGCTTACTCTGGAAATTCAAAGTCGTTATGGTTTGTCATTGGAAGAA
GCAGGACGAGCTAAAAAAGAACGCTCTTTACCTGATGACTATGACATCGAAGTCTTAGAGCCATTTTTAGATGCGGTAGT
GCAACAAGCAGCCAGATCTCTACAATTTTTCTTTTCTTCATCACAGTTCAATGAAATAGACCATATTTTACTAGCGGGTG
GGAATGCCAATATTCCTGGGCTTGCCAAATTGTTGCAGCAAAAACTTGGTTATCGTGTGACCATTGCCAATCCATTTTTA
CAAATGGGTTTTTCTCCTCAAGTCGATATTCAAAAACTTGAAAATGATGCTTCATCATTAATGGTGGCATGTGGTTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

95.455

100

0.955
  comM Acinetobacter nosocomialis M2

95.455

100

0.955
  comM Acinetobacter baylyi ADP1

82.102

100

0.821
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42