Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   MJX77_RS07045 Genome accession   NZ_CP092454
Coordinates   1479412..1480161 (+) Length   249 a.a.
NCBI ID   WP_252061016.1    Uniprot ID   -
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1474412..1485161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS07030 ponA 1474993..1477554 (-) 2562 WP_191900376.1 penicillin-binding protein PBP1a -
  MJX77_RS07035 pilM 1477716..1478774 (+) 1059 WP_252061013.1 pilus assembly protein PilM Machinery gene
  MJX77_RS07040 pilN 1478774..1479415 (+) 642 WP_013196695.1 PilN domain-containing protein Machinery gene
  MJX77_RS07045 pilO 1479412..1480161 (+) 750 WP_252061016.1 type 4a pilus biogenesis protein PilO Machinery gene
  MJX77_RS07050 pilP 1480172..1480699 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  MJX77_RS07055 pilQ 1480763..1482892 (+) 2130 WP_252061018.1 type IV pilus secretin PilQ family protein Machinery gene
  MJX77_RS07060 aroK 1482904..1483473 (+) 570 WP_004789808.1 shikimate kinase AroK -
  MJX77_RS07065 aroB 1483502..1484584 (+) 1083 WP_252061022.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28100.98 Da        Isoelectric Point: 4.8490

>NTDB_id=657723 MJX77_RS07045 WP_252061016.1 1479412..1480161(+) (pilO) [Acinetobacter sp. AHP123]
MSPDELHELSLEQAPSKKKQITLEKFLQQFNTLDMNSYGSWPLSVKITCWVFIFFAVLALGYFVVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITMEATGDYHAFGAFVSSIAALPRIVTMHDFVVEVAPVKDSKSDIPVLNYSIKAKTYRYMGAVGNAEHPENNASASVTPV
PSTANTQSK

Nucleotide


Download         Length: 750 bp        

>NTDB_id=657723 MJX77_RS07045 WP_252061016.1 1479412..1480161(+) (pilO) [Acinetobacter sp. AHP123]
ATGAGTCCGGATGAACTTCATGAGTTGTCGTTAGAACAAGCTCCATCTAAGAAAAAACAGATTACTTTAGAAAAATTTCT
TCAGCAATTTAACACACTAGATATGAACAGTTATGGTAGCTGGCCATTATCTGTGAAAATTACGTGCTGGGTTTTTATTT
TCTTTGCTGTTTTGGCTTTGGGATACTTTGTTGTTATTCAGCCAAAGTTACAAGCAATTGATAATGCACAGGCGCAAGAA
AGTAATTTGTTGAATGAATTTCGCGAAAAGGATTCAAAATTACGTAACTTGCAACAATATCAACTTCAACTTCAAGAGAT
GCAAGCAAACTTTAATCAGCAGTTAGAGCAACTGCCAAAAGAAACCGAGATTCCAAGCTTGGTTGAGGATATTAACTTAA
CTGGGGTGAATTCTGGTCTGAAGTTTAAAAATATTCGTTTAGAAGATGAAGTGAAGCAGGAAATCTTTATTGAACAGCCT
ATTACGATGGAAGCAACTGGCGATTATCACGCTTTTGGTGCTTTTGTTAGTAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTGTTGTAGAAGTTGCACCTGTTAAAGATAGTAAGTCAGATATTCCTGTCCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGCGCCGTAGGAAATGCTGAACATCCGGAAAACAACGCTTCGGCTTCAGTAACACCTGTT
CCCTCTACTGCTAATACACAGTCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

84.082

98.394

0.827
  comO Acinetobacter baylyi ADP1

68.548

99.598

0.683