Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MJX77_RS07040 Genome accession   NZ_CP092454
Coordinates   1478774..1479415 (+) Length   213 a.a.
NCBI ID   WP_013196695.1    Uniprot ID   A0AAN0P5G9
Organism   Acinetobacter sp. AHP123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473774..1484415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJX77_RS07020 - 1473780..1474112 (+) 333 WP_252061008.1 hypothetical protein -
  MJX77_RS07025 - 1474115..1474939 (+) 825 WP_252061010.1 putative RNA methyltransferase -
  MJX77_RS07030 ponA 1474993..1477554 (-) 2562 WP_191900376.1 penicillin-binding protein PBP1a -
  MJX77_RS07035 pilM 1477716..1478774 (+) 1059 WP_252061013.1 pilus assembly protein PilM Machinery gene
  MJX77_RS07040 pilN 1478774..1479415 (+) 642 WP_013196695.1 PilN domain-containing protein Machinery gene
  MJX77_RS07045 pilO 1479412..1480161 (+) 750 WP_252061016.1 type 4a pilus biogenesis protein PilO Machinery gene
  MJX77_RS07050 pilP 1480172..1480699 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  MJX77_RS07055 pilQ 1480763..1482892 (+) 2130 WP_252061018.1 type IV pilus secretin PilQ family protein Machinery gene
  MJX77_RS07060 aroK 1482904..1483473 (+) 570 WP_004789808.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23858.17 Da        Isoelectric Point: 5.4112

>NTDB_id=657722 MJX77_RS07040 WP_013196695.1 1478774..1479415(+) (pilN) [Acinetobacter sp. AHP123]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVSSGWFYLNQKLDDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGVTTTDDTANTSVSADKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=657722 MJX77_RS07040 WP_013196695.1 1478774..1479415(+) (pilN) [Acinetobacter sp. AHP123]
ATGGCAACAATTAATTTACTTCCTTGGCGTGATGGGCTTAGGGAACAACGCAAAAAACAATTTATTATTTTCTGTTTTGG
GGTCGTTGTGCTGGGGATTACCACTGTATCTTCTGGGTGGTTTTATTTAAATCAAAAATTAGATGATCAAGAACAAGCTA
ATCAACTCATTACCAGTACAAACCAGAGTCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGATGCC
ATTATCGAACGTATGAAACTTATTCAGGGGTTGCAAAGTCAACGTCCTGTTGTTGTGCGTTTGGTGGATGAATTGGTACG
GGTGACTCCGGCAGCGATGTATTTGACTAAATTTAGCAGAACTGGAGATAAATTTACCATTGAAGGTAAAGCAGAAAGTC
CAAATACGGTCGCGGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAATGCTTTTATGAACTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGACGGCGAGTTCACTGCTTCCTAGAGTAGAAGATAGTTATGGCAGTTTTGTTGTGACTGT
TGATTTAGGAGAAATGGGGGTGACTACAACAGATGATACCGCCAATACGTCTGTAAGTGCGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704