Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MCP04_RS00545 Genome accession   NZ_CP092419
Coordinates   113692..114057 (-) Length   121 a.a.
NCBI ID   WP_017290869.1    Uniprot ID   A0AA97ASN3
Organism   Leptolyngbya boryana IU 594     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108692..119057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCP04_RS00535 (MCP04_00535) pilJ 110255..112894 (-) 2640 WP_017290866.1 methyl-accepting chemotaxis protein Machinery gene
  MCP04_RS00540 (MCP04_00540) - 113150..113680 (-) 531 WP_017290868.1 chemotaxis protein CheW -
  MCP04_RS00545 (MCP04_00545) pilH 113692..114057 (-) 366 WP_017290869.1 response regulator transcription factor Machinery gene
  MCP04_RS00550 (MCP04_00550) - 114186..115418 (-) 1233 WP_017290870.1 response regulator -
  MCP04_RS00555 (MCP04_00555) hmpF 115638..117344 (+) 1707 WP_026148972.1 pilus motility taxis protein HmpF -
  MCP04_RS00560 (MCP04_00560) tilS 117461..118432 (-) 972 WP_017290872.1 tRNA lysidine(34) synthetase TilS -
  MCP04_RS00565 (MCP04_00565) - 118597..118815 (+) 219 WP_026148973.1 DUF433 domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13408.58 Da        Isoelectric Point: 5.1869

>NTDB_id=657339 MCP04_RS00545 WP_017290869.1 113692..114057(-) (pilH) [Leptolyngbya boryana IU 594]
MSTVLVVEDSVTQREMITDLLKGSGIEVTIATDGVEALEHIQGHCPDLVVLDIVMPRMNGYEVCRRLKADPKTQKVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=657339 MCP04_RS00545 WP_017290869.1 113692..114057(-) (pilH) [Leptolyngbya boryana IU 594]
ATGAGTACAGTTTTAGTCGTGGAAGATAGTGTCACCCAAAGAGAGATGATCACTGATCTGCTTAAGGGAAGTGGCATTGA
GGTGACGATCGCGACCGATGGCGTTGAAGCCTTGGAACACATTCAAGGGCATTGTCCTGATCTTGTGGTTTTGGATATTG
TCATGCCTCGAATGAATGGCTATGAGGTTTGCCGTCGGCTCAAAGCCGATCCCAAAACTCAGAAAGTGCCAGTCGTGATG
TGTTCGTCCAAAGGAGAAGAGTTCGATCGCTATTGGGGCATGAAGCAGGGGGCAGATGCCTATATTGCTAAGCCCTTTCA
GCCCACTGAACTCGTCGGTACAGTCAAACAATTGTTGCGCGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  pilG Acinetobacter baumannii strain A118

42.105

94.215

0.397
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372